Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a16
         (119 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317...    33   0.025
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844...    31   0.17 
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...    31   0.17 

>05_01_0401 +
           3169979-3169981,3170071-3170160,3170556-3170684,
           3170814-3170999,3172001-3172159
          Length = 188

 Score = 33.5 bits (73), Expect = 0.025
 Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +3

Query: 6   PRSHTKPYVRTKGH--EKARPSRRA 74
           P SHTKPYVR+KG   EKAR  R +
Sbjct: 159 PHSHTKPYVRSKGRKFEKARGRRNS 183


>07_03_1667 +
           28484069-28484071,28484151-28484240,28484339-28484491,
           28484575-28484757,28486137-28486295
          Length = 195

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +3

Query: 6   PRSHTKPYVRTKGH--EKARPSRRA 74
           P S+TKPYVR+KG   EKAR  R +
Sbjct: 166 PHSNTKPYVRSKGRKFEKARGRRNS 190


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +3

Query: 6   PRSHTKPYVRTKGH--EKARPSRRA 74
           P S+TKPYVR+KG   EKAR  R +
Sbjct: 175 PHSNTKPYVRSKGRKFEKARGRRNS 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,236
Number of Sequences: 37544
Number of extensions: 28770
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 14,793,348
effective HSP length: 20
effective length of database: 14,042,468
effective search space used: 266806892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)