Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a16
         (119 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18 pro...    33   0.22 
DQ403032-1|ABD77165.1|  164|Homo sapiens ribosomal protein L18 p...    33   0.22 
BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18 p...    33   0.22 
BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18 p...    33   0.22 
BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18 p...    33   0.22 
AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18 p...    33   0.22 

>L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 6   PRSHTKPYVRTKGH--EKARPSRRAN 77
           P SHTKPYVR+KG   E+AR  RRA+
Sbjct: 159 PHSHTKPYVRSKGRKFERAR-GRRAS 183


>DQ403032-1|ABD77165.1|  164|Homo sapiens ribosomal protein L18
           protein.
          Length = 164

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 6   PRSHTKPYVRTKGH--EKARPSRRAN 77
           P SHTKPYVR+KG   E+AR  RRA+
Sbjct: 136 PHSHTKPYVRSKGRKFERAR-GRRAS 160


>BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 6   PRSHTKPYVRTKGH--EKARPSRRAN 77
           P SHTKPYVR+KG   E+AR  RRA+
Sbjct: 159 PHSHTKPYVRSKGRKFERAR-GRRAS 183


>BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 6   PRSHTKPYVRTKGH--EKARPSRRAN 77
           P SHTKPYVR+KG   E+AR  RRA+
Sbjct: 159 PHSHTKPYVRSKGRKFERAR-GRRAS 183


>BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 6   PRSHTKPYVRTKGH--EKARPSRRAN 77
           P SHTKPYVR+KG   E+AR  RRA+
Sbjct: 159 PHSHTKPYVRSKGRKFERAR-GRRAS 183


>AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 6   PRSHTKPYVRTKGH--EKARPSRRAN 77
           P SHTKPYVR+KG   E+AR  RRA+
Sbjct: 159 PHSHTKPYVRSKGRKFERAR-GRRAS 183


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,079
Number of Sequences: 237096
Number of extensions: 159400
Number of successful extensions: 377
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 76,859,062
effective HSP length: 20
effective length of database: 72,117,142
effective search space used: 1370225698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)