Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a16
         (119 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...    33   0.037
U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily ass...    26   3.2  
AF250045-1|AAG17620.1|  246|Caenorhabditis elegans thioredoxin-l...    25   7.5  
AF125955-2|AAD14719.1|  246|Caenorhabditis elegans Dumpy : short...    25   7.5  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score = 32.7 bits (71), Expect = 0.037
 Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 6   PRSHTKPYVRTKGH--EKARPSRRAN 77
           P SHTKPYVR+KG   E+AR  RRA+
Sbjct: 159 PHSHTKPYVRSKGRKFERAR-GRRAS 183


>U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 320 protein.
          Length = 440

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 87  KIRH*HDDWALLFHVPWCEHRV*CESAV 4
           K+ +  D W + F+ PWC H   C+S V
Sbjct: 37  KVINSDDIWIVEFYAPWCGH---CKSLV 61


>AF250045-1|AAG17620.1|  246|Caenorhabditis elegans
          thioredoxin-like protein DPY-11 protein.
          Length = 246

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 66 DWALLFHVPWC 34
          +W + FH PWC
Sbjct: 41 EWMIEFHAPWC 51


>AF125955-2|AAD14719.1|  246|Caenorhabditis elegans Dumpy :
          shorter than wild-typeprotein 11 protein.
          Length = 246

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 66 DWALLFHVPWC 34
          +W + FH PWC
Sbjct: 41 EWMIEFHAPWC 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,486
Number of Sequences: 27780
Number of extensions: 26377
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 12,740,198
effective HSP length: 20
effective length of database: 12,184,598
effective search space used: 231507362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)