Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a16
         (119 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                19   5.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    19   7.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    19   7.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    19   7.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           18   9.7  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 12  SHTKPYVRTKGH 47
           SHT  Y+  KGH
Sbjct: 259 SHTIIYLSAKGH 270


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 6   PRSHTKP 26
           PRSH KP
Sbjct: 266 PRSHAKP 272


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 6   PRSHTKP 26
           PRSH KP
Sbjct: 266 PRSHAKP 272


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 6   PRSHTKP 26
           PRSH KP
Sbjct: 266 PRSHAKP 272


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 72  HDDWALLFH 46
           HDD  L FH
Sbjct: 386 HDDRTLFFH 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,414
Number of Sequences: 438
Number of extensions: 398
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 20
effective length of database: 137,583
effective search space used:  2614077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)