Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a15
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.10 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   0.42 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   1.3  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   2.3  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    25   5.2  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    24   6.9  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    24   6.9  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    24   9.1  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    24   9.1  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.10
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 235 VRVHRADTGRSSNELDRQTTELERRGMGL 321
           +R H+   GR+  ELDR+ T+L++R   L
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERAL 46


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 28.3 bits (60), Expect = 0.42
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 159 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 61
           Y    ES + D+ +  SH+ A +I Q  R+G R
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 313 FPCVPTQSFVDPIHLKICQYPHGGL 239
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 41   MSTTYIILLPFLLTCAIASAAECENATSLS 130
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 62  LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVN 199
           L+     C I     C  A  L  + DSL+  Y+  SP   K V+N
Sbjct: 371 LISIFKRCEIMLPKTCTVAHLLDKLFDSLVLKYNTSSP---KFVIN 413


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 236 SESTVRILADLQMNWIDKRLSWNAGEWGCXTWLVSSERLWRPDV 367
           S +++R  A  + + +  +L  N G+W   TW  +  R W  DV
Sbjct: 160 SPASLRETAAKEYDALTSKLG-NTGDWIYDTWSDNELRTWLHDV 202


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 36  IKCRRLILFCYRFSS 80
           I+CR  + FC+RF S
Sbjct: 66  IQCRDFMFFCWRFQS 80


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 160 RSGVSPRLQNRSQPDPAFETC*HS*VRVHRADTGRSSNELD 282
           RS  S R       +P   +     +  H+AD+G S NE++
Sbjct: 11  RSSTSKRSVIDDDSEPELPSMTKEAIASHKADSGSSDNEVE 51


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 113 NATSLSLMIDSLLATYDRESPPDSKIVV 196
           +A SL L    LLA  DRE+  ++K+++
Sbjct: 270 DAESLKLAASRLLALADREADNNAKLIM 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,573
Number of Sequences: 5004
Number of extensions: 29434
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)