Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2a15
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.13
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 0.92
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 0.92
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 2.1
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 2.1
11_01_0763 + 6402901-6403971,6404581-6404826 27 4.9
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 27 4.9
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 27 6.5
10_06_0175 - 11490280-11491000,11491869-11491947,11493613-114938... 26 8.6
09_04_0430 + 17502387-17503505 26 8.6
03_03_0256 + 15898702-15900420 26 8.6
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.13
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 337 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 173
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 29.5 bits (63), Expect = 0.92
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 235 VRVHRADTGRSSNELDRQTTELERRGMGLXHLAGVLGTL 351
V+ H + R S EL+RQ ELER+G L G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 0.92
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 250 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 161
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 122 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 277
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 364 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 197
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 359 ASTSVPRTPAKCXSPIPLRSNSVVCRSNSFEDLPVSARWTR 237
AST +PR P+ P+P S + + + DLP +AR TR
Sbjct: 365 ASTDIPRRPSHGHIPLPF---SQLDFARTVADLPPTARPTR 402
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 241 VHRADTGRSSNELDRQTTELERRGMG 318
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 180 SGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNG 67
S GD + + I + SDV SHSA + V NG
Sbjct: 339 SFGDRQEIKLHRQGIYKASDVTLSHSAQIGANSVVGNG 376
>10_06_0175 -
11490280-11491000,11491869-11491947,11493613-11493811,
11494003-11494044
Length = 346
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 361 RPPQAFRGHQPSAAAPFPCVPTQSFV 284
+PPQ G P+ P+P PTQ V
Sbjct: 128 QPPQPSLGWSPNLNLPYPLPPTQPTV 153
>09_04_0430 + 17502387-17503505
Length = 372
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 124 TVPHDRLAPRNVRSGVSPRLQNRSQPDPAFETC*HS*VRVHRAD 255
+ P R+AP+ + +P ++ + P P F T S +H+ D
Sbjct: 201 STPPQRVAPQPPATAAAPPIEPVAPPSPTFWTVCMSCCHIHQYD 244
>03_03_0256 + 15898702-15900420
Length = 572
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -1
Query: 222 ACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSH 106
A + C++++ +LES R+Y+ S+++ D++FS+
Sbjct: 301 ASMDCKIKIWDVLESRTCMRTYMGHSKAV---RDISFSN 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,043,681
Number of Sequences: 37544
Number of extensions: 237519
Number of successful extensions: 758
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -