Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2a14
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 28 1.3
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 28 1.7
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 2.3
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 3.0
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 27 4.0
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 4.0
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 26 5.3
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 7.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 7.0
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 7.0
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 9.3
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 9.3
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 9.3
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 197 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLD 343
QR K+D+KEK + ++A V+ +E+A L+ A K + K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 541 FFQVPVPTHQFHEYLFEISHGVHILIGGEDAGVGLGRFAVHRHRTARQQ-QAASNEYIEY 365
F + PTH F +YL S LI + V + + H + + R + S +Y E+
Sbjct: 146 FMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIMAADSKHNYSSGRPSIRLQSTQYFEH 205
Query: 364 DFAIASVV 341
I ++
Sbjct: 206 GLFILDLI 213
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 725 PARSPAPGCPSADVRSPGPA 666
PA PAPG P + R P PA
Sbjct: 521 PAGGPAPGYPGMNARGPVPA 540
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 27.1 bits (57), Expect = 3.0
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Frame = +2
Query: 203 IKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGEVIFD--V 376
+ ++K+D + Y G D LV A LDA +D + + Y E I D +
Sbjct: 376 LHSKKQDILKLYSDLGINDDLVVPFCEAASSLDA----IDDLNDYIHF-TYSEQIRDRAL 430
Query: 377 LIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYRYLE--KMFE 550
L+ GL P GS E + ++ E + ++F V R R++E +
Sbjct: 431 LMGTGLRRPQGSKYSFFEKFRKSSLYNLVKEFGMSAKDF-SFNVAQGARLRFVEDNTLSP 489
Query: 551 EEMKKVLVYLKGFDPEQRIKLAR 619
EE+ + V + PEQ ++ AR
Sbjct: 490 EELSRTYVTNELSSPEQVLQKAR 512
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 751 LLLDDREHFQHEVQRQV-VLQQMFVHQDQQH 662
LLLDDREH H+ + + LQ Q H
Sbjct: 581 LLLDDREHLSHDERSYIQQLQSQIKSQSVHH 611
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 4.0
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 737 SRTLPARSPAPGCPSADVRSPGPAARMEARIRYRST--VQSCAPA*CAVRDRSLSS 576
S T+P SPA G P+ +P P A A Y ST S P+ ++R SL++
Sbjct: 300 SATVPI-SPARGFPTTSAYNPAPPAYGMANPAYGSTGIRSSSIPSSGSIRSPSLTT 354
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 470 DMDTMRNFEQVFVKLMRRYRYLEKMFEEEMKKV 568
D + + N + FV+L YR +EK+ E V
Sbjct: 50 DREEIENITRTFVELQENYRLIEKIGEGTFSSV 82
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 418 RHRTARQQQAASNEYIEYDFA 356
R RT +Q + +YIEYDF+
Sbjct: 43 RKRTFDEQSEITKDYIEYDFS 63
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 198 NGSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTTDAMAKSYSMY 377
+ S + S+ T SAT S A ++ +S+ NSTT A A S S+
Sbjct: 187 SNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSIS 246
Query: 378 S 380
S
Sbjct: 247 S 247
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 471 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 370
SSL + M V DSP ++ E G S P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +1
Query: 478 HHAKFRTGIRETDASVQVLGKNVRRGNEKGSGLLERLRSRTA 603
H+A + + ++ SV++ G ++ +EKG + ++R+ A
Sbjct: 607 HNAPKKKNLNDSLKSVELEGNGIKLSSEKGKNNVNKVRNDNA 648
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 549 SNIFSKYLYRRISFTNTCSKFRMVSISSLAE 457
S FS++ Y F NTC F + S E
Sbjct: 460 SKRFSRFYYGHYVFVNTCHNFFLTLYQSFTE 490
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -3
Query: 519 RISFTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSN 367
+ S + V S+L + +VL L P P G PA++TSN
Sbjct: 69 KASIPTNINGLSQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,278,659
Number of Sequences: 5004
Number of extensions: 72332
Number of successful extensions: 239
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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