Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2a14
(785 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20) 145 4e-35
SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07) 31 0.80
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 30 2.4
SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) 29 3.2
SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) 29 3.2
SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5) 29 4.3
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3) 29 4.3
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_40901| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11) 29 4.3
SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06) 29 4.3
SB_23487| Best HMM Match : Calcipressin (HMM E-Value=0) 29 4.3
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 5.6
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 28 7.5
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10) 28 7.5
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058) 28 9.9
SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08) 28 9.9
>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
Length = 457
Score = 145 bits (351), Expect = 4e-35
Identities = 75/147 (51%), Positives = 99/147 (67%), Gaps = 6/147 (4%)
Frame = +2
Query: 224 EKEKYDPNGFRDALVQGLERA---GGDLDAAYKYLDSAGSKLDYRRYGEVIFDVLIAGGL 394
EKEK+ P GFRDA++ GL G DL+ K+LD++G KL+YR YGE +FDVL A
Sbjct: 2 EKEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKFLDTSGGKLNYRLYGEFLFDVLFAA-- 59
Query: 395 LLPGGSVSMDGESP---KTNTCIFSANEDMDTMRNFEQVFVKLMRRYRYLEKMFEEEMKK 565
PGGS+ DG +P KTN CIF AN D +T+R Q+ KL+ RYRYL+K +E+EM K
Sbjct: 60 --PGGSIVEDGPNPSTYKTNICIFEANNDNETLRKHVQMHNKLICRYRYLQKSYEDEMNK 117
Query: 566 VLVYLKGFDPEQRIKLARMTALWIGNG 646
+L++LKGF E+R KLA T + + NG
Sbjct: 118 ILLFLKGFTDEEREKLAFTTGVVLANG 144
>SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)
Length = 500
Score = 31.5 bits (68), Expect = 0.80
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -1
Query: 656 EARIRYRSTVQSCAPA*CAVRDRSLSSRPEPFSFPLRTFFPSTCT---DASVSRIPVRNF 486
E R + + S P C + RS+S P+P+ +P+ T +P T +VS+ VR +
Sbjct: 156 EGYCRTDAEINSRCPYSCR-KYRSVSPAPQPYPYPIGTLYPYQPTPVPGVTVSQPKVRGW 214
Query: 485 AW 480
W
Sbjct: 215 QW 216
>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 553 LFEHFFQVPVPTHQFHEYLFEISHGVHILIGGEDAG 446
+F H VPT QF++Y EIS + I +GG G
Sbjct: 140 VFAHIISTEVPTVQFNQYWVEISDAL-ISLGGVSQG 174
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 593 PEQRIKLARMTALWIGNGCVPPSVLLVLVN 682
PE++ ++ ++ LW NG PP V+ L+N
Sbjct: 92 PEEQGRIVKVLNLWQKNGIFPPEVIQPLIN 121
>SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 334 KTRLPTLWRSHIRCTHCWRPAAAG 405
+ RLP WRS R H W+P+ G
Sbjct: 19 RDRLPFQWRSRARRNHGWKPSLKG 42
>SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
Length = 609
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 201 GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 347
G + KE +K TV T + P AIS+QPT +P D+N T
Sbjct: 40 GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90
>SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
Length = 366
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 201 GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 347
G + KE +K TV T + P AIS+QPT +P D+N T
Sbjct: 40 GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90
>SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5)
Length = 114
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 553 LFEHFFQVPVPTHQFHEYLFEISHGVHILIGGEDAG 446
+F H VPT QF++Y EIS + I +GG G
Sbjct: 11 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 45
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 553 LFEHFFQVPVPTHQFHEYLFEISHGVHILIGGEDAG 446
+F H VPT QF++Y EIS + I +GG G
Sbjct: 1227 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 1261
>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 553 LFEHFFQVPVPTHQFHEYLFEISHGVHILIGGEDAG 446
+F H VPT QF++Y EIS + I +GG G
Sbjct: 133 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 167
>SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)
Length = 109
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 467 EDMDTMRNFEQVFVKLMRRYRYLEKMFEEEMKKV 568
+DM MR Q++ K MRR R L +M ++M+++
Sbjct: 68 KDMRRMRGLHQMWAKDMRRMRSLPQMRAKDMRRM 101
>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Frame = +2
Query: 194 GQRIKTRKRDEK-----EKYDPNGFRDALVQGLER 283
G++ K RK DEK +K+DP+G LV+ LER
Sbjct: 204 GEKDKGRKSDEKSEDGEKKFDPSGCDKDLVEALER 238
>SB_40901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -2
Query: 763 GDAALLLDDREHFQHEVQRQVVLQQMFVHQDQQH 662
G+ A+ ++ E F+HEV + ++ + M V ++QH
Sbjct: 36 GETAIEAENEEDFEHEVLKFLLYRNMEVSPEEQH 69
>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 553 LFEHFFQVPVPTHQFHEYLFEISHGVHILIGGEDAG 446
+F H VPT QF++Y EIS + I +GG G
Sbjct: 131 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 165
>SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)
Length = 285
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 553 LFEHFFQVPVPTHQFHEYLFEISHGVHILIGGEDAG 446
+F H VPT QF++Y EIS + I +GG G
Sbjct: 133 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 167
>SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06)
Length = 114
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 460 GEDAGVGLGRFAVHRHRTARQQQAASNEYIEYDFAIASVV 341
G AG G G F H +R R+++ EYIE ASV+
Sbjct: 69 GSSAGAGSGEF--HVYRATRRREYNRQEYIEKKSKEASVI 106
>SB_23487| Best HMM Match : Calcipressin (HMM E-Value=0)
Length = 422
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 583 FQVDQNLFHFLFEHFFQVPVPTHQFHEYLFEISHG 479
F V+ FH +VP+PT QF + + HG
Sbjct: 366 FFVNYRHFHMFPARLVKVPMPTSQFGNFSMHVPHG 400
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 438 LGDSPSIDTEPPGSSRPPAMSTSNMTSP*RR*SSFDPAES 319
L D+P+ + PP S+ P A ST M+S F PA +
Sbjct: 162 LWDAPTPTSAPPASAPPKAQSTQGMSSGTSEQPWFSPANT 201
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 165 VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSGP 287
V R K + RV + + R+R + LWYR WS P
Sbjct: 560 VEREKREKERVQKKLEKDKERERQREQKRKEALWYREWSRP 600
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 553 LFEHFFQVPVPTHQFHEYLFEISHGVHILIGGEDAG 446
+F H VPT QF++Y EIS + I +GG G
Sbjct: 293 VFAHIKSTEVPTVQFNQYWKEISDAL-ISLGGVSQG 327
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -3
Query: 510 FTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPA 382
+ + S+ R +++++ ++QV PSI ++PP PPA
Sbjct: 127 YQRSTSQDRHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPA 169
>SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)
Length = 1378
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = +1
Query: 403 GRFGVDGRRIAQDQH-----LHLLRQ*GYGHHAKFRTGIRETDASVQV-LGKNVRRGNEK 564
G GV +R +D + ++ LRQ K RT + D V + L N+ E
Sbjct: 92 GSGGVKRKRDPEDDNGKEDVVYELRQTSTKRSTKMRTDCTDYDLKVDLPLRDNLEEALED 151
Query: 565 GSGLLERLRSRTAHQAGAHD 624
G+L+R+ T H HD
Sbjct: 152 VEGVLDRVLDDTLHGVQEHD 171
>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
Length = 1187
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +2
Query: 275 LERAGGDLDAAYKYLDSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSVSMDGESPKTN 445
L+ G D +Y ++ D + + DV+ G L+ GG +S ES TN
Sbjct: 543 LDSLGSQGDPTEEYREAKDLIRDILNHKPDVVDVITKGNELIDGGKISSADESEITN 599
>SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)
Length = 409
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 320 LGTCRLRRDRHRPAPDPVPERRGNRSGHTSLSHLFFWS*S-VDPIILVF 177
L C + RDR+ P+ R + HT++ +F W S V +I ++
Sbjct: 26 LSLCAITRDRYLAVTSPLQYLRRMPNAHTAVQIVFCWVTSLVSAVITIY 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,505,690
Number of Sequences: 59808
Number of extensions: 577131
Number of successful extensions: 1896
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1877
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -