Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a08
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    26   1.8  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    24   5.4  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    24   7.1  
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    24   7.1  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   7.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    23   9.4  

>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 132 GCALEHIPPAALRLAYVILHIFVNLSTEILMQLALVLCNIHLCPTNYMEIY 284
           G AL    PA+L L+YVI+   +      L ++   L      P  Y+E Y
Sbjct: 65  GSALSESGPASLFLSYVIMSFVIWTVMNALGEMCTYLPLSGASPITYIERY 115


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 64  SSWGWSATLHFRDT 23
           ++W WS+  H RDT
Sbjct: 150 NAWVWSSVFHIRDT 163


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 55  PRTIGSRNVVLG*GYALEEVFIERAEDVRS 144
           PR+IG+RN  LG G    +VF+ R  D+RS
Sbjct: 460 PRSIGTRNSGLGTG----KVFV-RYSDIRS 484


>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 211 VDKLTNICNIT-YANLSAAGGMCSSAHPLRA 122
           V+K +++  +  +A+     G+C + HPL+A
Sbjct: 115 VNKYSDVATLAKHASCPVINGLCDTFHPLQA 145


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 116 LLSAQRMCARTHSTGGAQVSVRNIAY 193
           ++ A RMCA  H  G   VS   +AY
Sbjct: 54  VILAYRMCAVYHHVGYKDVSTFGLAY 79


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 183  ILHIFVNLSTEILMQLALVLCNIHLCP 263
            IL  F N S  +L    LVL  +HL P
Sbjct: 1350 ILAKFENRSLTLLQTTLLVLVTVHLIP 1376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,302,497
Number of Sequences: 5004
Number of extensions: 22555
Number of successful extensions: 34
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)