Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a08
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0132 - 18446105-18446197,18446281-18446372,18446684-184467...    26   6.6  
07_01_0233 - 1703602-1705623                                           26   8.7  

>01_05_0132 -
           18446105-18446197,18446281-18446372,18446684-18446783,
           18446855-18447046,18447216-18447536,18447848-18447943,
           18448006-18448098,18448181-18448306,18448358-18449053,
           18449130-18449162
          Length = 613

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 241 YAIFIYVLPTTWKFIVNDSVNLIIKYKSPKK 333
           Y I + + PTT +F+ +D +NL+I     K+
Sbjct: 166 YTIGLILCPTTERFVHSDYLNLLINIADIKR 196


>07_01_0233 - 1703602-1705623
          Length = 673

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 223 ISISVDKLTNICNITYANLSAAGGMCSSAH 134
           +S+  D  + I ++ Y  LSAA G+  S+H
Sbjct: 236 LSMPYDLSSVISDVAYVGLSAATGLAGSSH 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,527,201
Number of Sequences: 37544
Number of extensions: 150871
Number of successful extensions: 283
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)