Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a08
         (336 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36777| Best HMM Match : VWA (HMM E-Value=0)                         28   2.2  
SB_43319| Best HMM Match : Laminin_A (HMM E-Value=0.0086)              27   5.0  
SB_56136| Best HMM Match : PAN (HMM E-Value=0.63)                      26   6.6  
SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)                     26   6.6  
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)                     26   8.7  

>SB_36777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1303

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 14  ISQSISKMKCSAPPPGRSVVVTLC*VKV 97
           + Q+I    C+APPP ++  V +C  KV
Sbjct: 372 VIQTIKDKACNAPPPTQTPTVKVCKAKV 399



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 14  ISQSISKMKCSAPPPGRSVVVTLC*VKV 97
           + Q+I    C+APPP ++  V +C  KV
Sbjct: 569 VIQTIKDKACNAPPPTQTPTVKVCKAKV 596


>SB_43319| Best HMM Match : Laminin_A (HMM E-Value=0.0086)
          Length = 375

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 186 LHIFVNLSTEILMQLALVLCNIHLCPT-NYMEIY 284
           L++ VNLS+  L ++AL+   +  CPT N ++++
Sbjct: 219 LNVVVNLSSRELGEVALLSKGLKFCPTPNELDVF 252


>SB_56136| Best HMM Match : PAN (HMM E-Value=0.63)
          Length = 88

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 241 NTKANCISISVDKLTNICNITYANLSAAGGMCS 143
           NT   C+    D  T IC ++      AGG+ S
Sbjct: 38  NTYPGCVYFYYDVTTGICQLSDVTADHAGGLAS 70


>SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)
          Length = 808

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 180 RTLT*APPVECVRAHILCALNKY 112
           RT   AP +EC   HILC + +Y
Sbjct: 34  RTKPLAPQIECGCDHILCEIARY 56


>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
          Length = 1470

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 162  PPVECVRAHILCALNKYFLKCI 97
            PPV+ V AH+   L KY  KC+
Sbjct: 1406 PPVKIVLAHLNNDLGKYEQKCV 1427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,621,499
Number of Sequences: 59808
Number of extensions: 176035
Number of successful extensions: 296
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)