Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a08
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.57 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   0.57 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   2.3  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   2.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   7.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   7.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   9.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   9.2  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 0.57
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 193 ICNITYANLSAAGGM 149
           IC ++++N S AGGM
Sbjct: 225 ICKLSHSNASVAGGM 239


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 0.57
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 193 ICNITYANLSAAGGM 149
           IC ++++N S AGGM
Sbjct: 225 ICKLSHSNASVAGGM 239


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 162 PPVECVRAHILCALNKYFLKCITLT*HNVTTTDRP 58
           P ++C  AHI C   +   KC   T    TT + P
Sbjct: 359 PVLDCHTAHIACKFAEIKEKCDRRT--GKTTEENP 391


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 162 PPVECVRAHILCALNKYFLKCITLT*HNVTTTDRP 58
           P ++C  AHI C   +   KC   T    TT + P
Sbjct: 70  PVLDCHTAHIACKFAEIKEKCDRRT--GKTTEENP 102


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 2   FFFLISQSISKMKCSAPPPGRSVVVTL 82
           FF LIS+ I     + P  G+ ++ T+
Sbjct: 280 FFLLISEIIPSTSLALPLLGKYLLFTM 306


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -1

Query: 162 PPVECVRAHILCALNKYFLKC 100
           P ++C  AHI C       KC
Sbjct: 359 PVLDCHTAHIACKFADIKEKC 379


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 124 RAEDVRSNTF 153
           RAED+  NTF
Sbjct: 180 RAEDINMNTF 189


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 257 MSYQLHGNLL 286
           +S+ LHGNLL
Sbjct: 357 LSHPLHGNLL 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,809
Number of Sequences: 438
Number of extensions: 1741
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)