Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a05
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694...    31   0.31 
11_06_0254 - 21721667-21721718,21722025-21722647                       27   6.6  
09_02_0247 + 6222463-6222628,6223121-6223134                           27   6.6  
05_02_0122 - 6840840-6841307                                           27   6.6  
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254...    27   8.7  
06_03_0714 - 23814826-23814997,23815080-23815164,23815680-238157...    27   8.7  
04_04_0312 + 24314940-24315143,24316074-24316253,24316801-243170...    27   8.7  

>02_04_0544 -
           23768808-23768910,23769005-23769030,23769379-23769497,
           23769542-23769668,23769842-23769905,23769981-23770095,
           23770867-23771101,23771196-23771382,23771948-23772305,
           23772432-23772465
          Length = 455

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 186 PTTPTAVKPPRVGPKTSLNHSIGSSDG-RCVQRAGT*STRAYDSRLLGIPR 37
           P  PT   PP   PKT+ + +  SSDG R +    + S   YD R L + R
Sbjct: 24  PPYPTGSAPPVRLPKTACSATYFSSDGSRLLATVASASATVYDCRTLSVVR 74


>11_06_0254 - 21721667-21721718,21722025-21722647
          Length = 224

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 189 FPTTPTAVKPPRVGPKTSLNHSIGSSDGRCVQRAGT*STRAYDS 58
           F + PT+ +P R+   ++ +H + S+DG+ + RAG      +D+
Sbjct: 144 FASVPTSTQPNRMFVHSATSHGLVSNDGKQL-RAGLPQRTIFDA 186


>09_02_0247 + 6222463-6222628,6223121-6223134
          Length = 59

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 142 LRTDTRWLHGRRRCWE 189
           L+   RWL+  RRCW+
Sbjct: 34  LKESPRWLYSSRRCWD 49


>05_02_0122 - 6840840-6841307
          Length = 155

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 123 IGSSDGRCVQRAGT*STRAYDSRLLGIPRLWG 28
           +G+  G C     + ++R Y S L+G+PR  G
Sbjct: 109 VGAGGGGCTSSRASITSRVYFSGLIGLPRSIG 140


>09_06_0111 -
           20924838-20924969,20925147-20925290,20925391-20925453,
           20925993-20926116,20926779-20927005,20927088-20927255,
           20927348-20927498,20927567-20927889
          Length = 443

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 201 SLVNFPTTPTAVKPPRVGPKTSLNHSIGSS 112
           + +  PTT  A     VG KT +NH +G +
Sbjct: 203 NFIQIPTTLMAQVDSSVGGKTGINHPLGKN 232


>06_03_0714 -
           23814826-23814997,23815080-23815164,23815680-23815791,
           23817203-23817304,23817375-23817447,23817918-23817997,
           23818076-23818267,23818945-23819064,23819157-23819244,
           23819319-23819353,23819447-23819518,23819860-23819931,
           23820054-23821189,23822011-23822362
          Length = 896

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +3

Query: 39  EEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSDRHAVASRPSALL 185
           ++F+ +A  +L +      ++   R ++LNDLV+  ++  +     +LL
Sbjct: 665 DDFIKAAEQQLEMRNQCRIINQQARLWKLNDLVKRENKRDIVLNYCSLL 713


>04_04_0312 +
           24314940-24315143,24316074-24316253,24316801-24317030,
           24317205-24317375,24317685-24317790,24318099-24318305,
           24318646-24318806,24319001-24319103
          Length = 453

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 204 SSLVNFPTTPTAVKPPRVGPKTSLNHSIGSSD 109
           SS ++ P  P A+ PP    +T    SIGS+D
Sbjct: 49  SSRIDLPGRPAALVPPSGKKQTKEKISIGSTD 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,179,040
Number of Sequences: 37544
Number of extensions: 216462
Number of successful extensions: 498
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)