Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a05
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z70208-7|CAA94139.1|  287|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine r...    27   4.4  
Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical...    27   5.9  
AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical...    27   5.9  
AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical
           protein Y53H1B.1 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = -1

Query: 294 TYHTQYNTR**SFRRFPYGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 115
           TY+   N        F + + V+T+     S+ +N         PPR GP  S   S  S
Sbjct: 230 TYNKDNNVAYAQVNTFKFADKVSTYFQCAVSTCMNTEGMCDGKTPPRCGPAGSFRSSSSS 289

Query: 114 SD 109
           +D
Sbjct: 290 ND 291


>Z70208-7|CAA94139.1|  287|Caenorhabditis elegans Hypothetical
           protein F54B11.7 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 186 PTTPTAVKPPRVGPKTSLNHS-IGSSD 109
           PTTP A KP    PKTSL+ S  GS+D
Sbjct: 69  PTTPPA-KPKEPAPKTSLSKSDSGSAD 94


>AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein28 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 253 AEGSLTCVVLCVICKYFIYLFIYIYACIHSIVLNFY 360
           AE SLT   + +IC Y     I I A ++SI  ++Y
Sbjct: 252 AEVSLTVTTVSMICSYLSNSMIVIAAQLNSIEYSYY 287


>Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 231 VTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 115
           VT  TS K     +   TP + KPPR  P+T L+    S
Sbjct: 115 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 153


>Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 231 VTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 115
           VT  TS K     +   TP + KPPR  P+T L+    S
Sbjct: 113 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 151


>AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 231 VTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 115
           VT  TS K     +   TP + KPPR  P+T L+    S
Sbjct: 115 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 153


>AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 231 VTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 115
           VT  TS K     +   TP + KPPR  P+T L+    S
Sbjct: 113 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 151


>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
           protein R09A1.1 protein.
          Length = 1121

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 86  PALCTHRPSLLPIE*FSEVFGPTR-GGFT 169
           P  C ++ S +P+E  S +  PTR GGFT
Sbjct: 515 PEQCGNKHSAMPLELVSYIVVPTRYGGFT 543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,741,676
Number of Sequences: 27780
Number of extensions: 191585
Number of successful extensions: 559
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)