Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a05
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   1.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   4.5  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   4.5  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   6.0  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   7.9  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   7.9  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    21   7.9  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    21   7.9  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    21   7.9  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    21   7.9  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    21   7.9  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    21   7.9  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 401 RDKRAREREKSDKR*KLRTIECMHAYIYINK*IKYLHITHNTTHV 267
           RD+R RER K  K     +  C ++  Y N    Y  + +N  ++
Sbjct: 290 RDRRERERSKEPKIISSLSNSCNYSNNYYNN-NNYKKLYYNINYI 333


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 401 RDKRAREREKSDK 363
           RDKR RER K  K
Sbjct: 68  RDKRERERSKERK 80


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 401 RDKRAREREKSDK 363
           RDKR RER K  K
Sbjct: 68  RDKRERERSKERK 80


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 401 RDKRAREREKSDK 363
           RD+R RER K  K
Sbjct: 301 RDRRERERSKESK 313


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 401 RDKRAREREKSDK 363
           RD+R RER K  K
Sbjct: 68  RDRRERERSKEPK 80


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 401 RDKRAREREKSDK 363
           RD+R RER K  K
Sbjct: 68  RDRRERERSKEPK 80


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 401 RDKRAREREKSDK 363
           RD+R RER K  K
Sbjct: 68  RDRRERERSKEPK 80


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 401 RDKRAREREKSDK 363
           RD+R RER K  K
Sbjct: 68  RDRRERERSKEPK 80


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 401 RDKRAREREKSDK 363
           RD+R RER K  K
Sbjct: 68  RDRRERERSKEPK 80


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 401 RDKRAREREKSDK 363
           RD+R RER K  K
Sbjct: 68  RDRRERERSKEPK 80


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 401 RDKRAREREKSDK 363
           RD+R RER K  K
Sbjct: 68  RDRRERERSKEPK 80


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 401 RDKRAREREKSDK 363
           RD+R RER K  K
Sbjct: 68  RDRRERERSKEPK 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,555
Number of Sequences: 438
Number of extensions: 2565
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)