Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p24
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    29   0.45 
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    27   3.2  
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces...    26   4.2  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.6  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   7.4  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   7.4  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   7.4  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.7  

>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 475 NARWIHADKYFDTAAQLYSYIVQNKVSDVH 564
           + +W H  +YF  A + Y Y+  N  +++H
Sbjct: 147 DVKWFHNHQYFAVAQKKYVYVYDNMGTEIH 176


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 342 PKINTIEVEFKGQHVIVQLYTEARRHDVGRDCVQ 443
           P++ TIE  F   H +V+LY   +   +GRD  Q
Sbjct: 694 PQLFTIEEAFTTVHHLVRLYKVKKPDTLGRDLKQ 727


>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 196

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 79  FGRIRKQFGLDDRNVVTFFGKGFNIHFVDYMVAVSW 186
           +G++    G   +N    +GKG  +H   YM++ +W
Sbjct: 89  YGQLYANDGRSSKNPTQNYGKGGLLHEHRYMISCTW 124


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 310 HNQITSTVIRVEAKNDYSLLACTAVYAYCC 221
           HN +   +  +E + DY  ++   V AYCC
Sbjct: 114 HNSLQKIIKTLEKELDYRPVSVQLVDAYCC 143


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 149 LKPLPKNVTTLRSSSP 102
           + P+P NV TLRSS P
Sbjct: 383 IPPIPSNVETLRSSLP 398


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 289 VIRVEAKNDYSLLACTAV-YAYCCKCGQYIGRVSYASLQP 173
           VI +E K +        V + +CC+C  YIG    +S +P
Sbjct: 50  VIEMEPKTEQMSTGRFIVRHIHCCRCHTYIGWKYVSSYEP 89


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = -2

Query: 225 AVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNS 46
           +V + NI ++ P P+ SH+          +   +  T V P     +T T     T VNS
Sbjct: 60  SVTSTNITSIVPPPSTSHNSTTTTVPPTTS--MNTTTTVPPTTSLNTTTTTAPPTTHVNS 117

Query: 45  DMSV 34
             +V
Sbjct: 118 TTTV 121


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 149 LKPLPKNVTTLRSSSPNCLRIRP 81
           +KPL + V   RSSS   LRI P
Sbjct: 789 MKPLEEKVPIYRSSSKQPLRIHP 811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,279
Number of Sequences: 5004
Number of extensions: 54087
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)