Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p24
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601...    35   0.066
11_01_0566 + 4466318-4466695,4466736-4466909,4466941-4467038,446...    30   1.4  
08_01_0269 - 2172363-2172538,2172632-2172697,2172790-2172887,217...    30   1.9  
09_01_0136 - 2030523-2031062,2032349-2032534,2032642-2032796,203...    29   2.5  

>11_01_0727 -
           6010537-6010548,6011029-6011606,6011709-6011774,
           6011867-6011964,6013238-6013608
          Length = 374

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -2

Query: 195 FPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVK 31
           FP P  +   + + Y++ LA+   +    K +++A+ST TY G    +  +MS K
Sbjct: 100 FPDPKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGFQAVMTEEMSEK 154


>11_01_0566 +
           4466318-4466695,4466736-4466909,4466941-4467038,
           4467211-4467346
          Length = 261

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 488 FTPTNIL-IPPHNCIVTLCKTKCPTCTSNRWTT 583
           F+P  I  + P   +VT C  KCP C S  W T
Sbjct: 156 FSPWLIAEMDPMMLMVTKCSMKCPECDSKGWAT 188


>08_01_0269 -
           2172363-2172538,2172632-2172697,2172790-2172887,
           2173442-2173791
          Length = 229

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 207 ILAVFPT-PAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVK 31
           I+  FP  PA +   +   Y+  LA    ++   K  ++A+ST TY G    V+ + S K
Sbjct: 88  IVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEETSEK 147


>09_01_0136 -
           2030523-2031062,2032349-2032534,2032642-2032796,
           2032917-2033079
          Length = 347

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +1

Query: 469 TVNARWIHADKYFDTAAQLY-----SYIVQNKVSDVHVKPLDDGGGR 594
           TVNA   H  KY   +A+ Y     +Y+    V++ HV+  D GG R
Sbjct: 209 TVNASTEHVMKYLTGSAKTYVNAAQAYVHVRDVAEAHVRVYDCGGAR 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,191,049
Number of Sequences: 37544
Number of extensions: 346813
Number of successful extensions: 916
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)