Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p24
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.9  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 64  ITAISFGRIRKQFGLDDRNVVTFF 135
           +  I+FG +  QFG   + +V FF
Sbjct: 245 VFCITFGLVAGQFGAQGKLIVDFF 268


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 397 NCTITCCPLNSTSIVLIFGYKKVAL*NLLHNQITSTVIRV 278
           +CTI     N T I ++F  ++    +L H  I S +I V
Sbjct: 190 DCTIEYSTGNFTCIQIVFNLRRRLGYHLFHTYIPSALIVV 229


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 187 RRKHGQYIDRIYSSKRRQQCKPAKNSHFL 273
           RR+  QY D +YS  R  +   A+  H L
Sbjct: 43  RRRWKQYQDTLYSGTRSSESLTAQAHHRL 71


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 387 IVQLYTEARRHDVGRDCVQRQPQVRVH 467
           I Q+Y E R  ++ R     QP   VH
Sbjct: 13  IRQVYGEDRWEEIRRQASVEQPSFSVH 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,508
Number of Sequences: 438
Number of extensions: 4181
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)