Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p20
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0684 + 31196825-31197252,31199189-31199291,31199402-311995...    28   5.4  
06_01_0473 + 3359152-3359198,3359568-3359768,3360502-3360646,336...    28   7.1  

>01_06_0684 +
           31196825-31197252,31199189-31199291,31199402-31199512,
           31199614-31199697,31199915-31199986,31200073-31200129,
           31200427-31200546,31201301-31201324,31201953-31202063,
           31202165-31202202,31202287-31202443,31202700-31202801,
           31202878-31202934,31203113-31203259,31203429-31203499,
           31203582-31203669,31203810-31203866,31203996-31204193
          Length = 674

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 258 FKGYSCERLHELIYSSIEGSAACFRRLNGTHQTGCSTSDKGAVGVVHFVQDHDD 419
           F G S E LH L+Y+ +  S A   ++  T+ + C     G + ++   Q   D
Sbjct: 410 FGGISIEELHRLVYAQVLCSHALTWQIAPTYLSSCLNQGLGLLEILLLKQPIQD 463


>06_01_0473 +
           3359152-3359198,3359568-3359768,3360502-3360646,
           3361141-3361407,3361608-3362150
          Length = 400

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 249 LLIFKGYSCERLHELIYSSIEGSAACFRRLNGTHQTGC 362
           LL F+GY  +    ++      +++ +  L+GTH T C
Sbjct: 163 LLSFRGYCADGPERVLVYDFMPNSSLYAHLHGTHSTEC 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,388,254
Number of Sequences: 37544
Number of extensions: 288591
Number of successful extensions: 587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)