Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p20
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical p...    38   0.006
Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical p...    38   0.006
AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical ...    29   2.1  

>Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical
           protein ZC434.6b protein.
          Length = 723

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
 Frame = +3

Query: 243 IILLIFKGYSCERLHELIYSSI---EGSAACFRRLNGTHQTGCSTSDKGAVGVVHFVQDH 413
           +I+LI  G  C+   + ++ ++   EG+A C+R  N TH+ GC  + +   G++  +   
Sbjct: 6   VIVLIIAGIRCDGFSDQVFRTLFIGEGNA-CYRTFNKTHEFGCQANRENENGLIVRIDKQ 64

Query: 414 DDV-----LWLATNAS-AGPYMAVVSTSKFGLVEF-LIDHPTNIAGVLTYENASDI---- 560
           +D       W +     +G Y A++  +         +     ++G++ Y +   I    
Sbjct: 65  EDFKNLDSCWNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNSGESIHPGD 124

Query: 561 -PSFFTHDTRCPNEFS 605
             +  +HD  CPN  S
Sbjct: 125 ESTAASHDAECPNAAS 140


>Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical
           protein ZC434.6a protein.
          Length = 721

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
 Frame = +3

Query: 243 IILLIFKGYSCERLHELIYSSI---EGSAACFRRLNGTHQTGCSTSDKGAVGVVHFVQDH 413
           +I+LI  G  C+   + ++ ++   EG+A C+R  N TH+ GC  + +   G++  +   
Sbjct: 6   VIVLIIAGIRCDGFSDQVFRTLFIGEGNA-CYRTFNKTHEFGCQANRENENGLIVRIDKQ 64

Query: 414 DDV-----LWLATNAS-AGPYMAVVSTSKFGLVEF-LIDHPTNIAGVLTYENASDI---- 560
           +D       W +     +G Y A++  +         +     ++G++ Y +   I    
Sbjct: 65  EDFKNLDSCWNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNSGESIHPGD 124

Query: 561 -PSFFTHDTRCPNEFS 605
             +  +HD  CPN  S
Sbjct: 125 ESTAASHDAECPNAAS 140


>AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical
           protein T08E11.1 protein.
          Length = 649

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 44  ENLIFLKLAYQVHLKKE*KPVTFSFSERITIISAT*YEIVLIKGK 178
           EN + L L ++ H K     VT++F E  T++  T Y  +L+K K
Sbjct: 27  ENHVDLVLDFENHFKLS--KVTYTFKEEDTLVEVTEYNKLLVKEK 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,788
Number of Sequences: 27780
Number of extensions: 285549
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)