Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p19
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0117 + 17411064-17411955,17412111-17413543                       29   3.7  
04_04_0343 - 24526223-24527009,24527216-24527340,24527763-245282...    28   4.9  

>03_04_0117 + 17411064-17411955,17412111-17413543
          Length = 774

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +2

Query: 47  NSSSPIIVINLVNTTKNSQNTIPCWIASISRMVTLTMG 160
           +SS P+++ +L+     S   +P W+AS+  +V LT+G
Sbjct: 703 SSSPPLLLRSLL--LYGSLEALPSWMASLDNLVKLTLG 738


>04_04_0343 -
           24526223-24527009,24527216-24527340,24527763-24528203,
           24528536-24528637
          Length = 484

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 274 NFQGRLLHQVSRIWVEKRLGWRF*LIECTV 363
           N  G L+  V  +W+EK LGW    + C +
Sbjct: 121 NSLGALIGLVFLVWIEKNLGWDIGFLLCAL 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,023,190
Number of Sequences: 37544
Number of extensions: 205393
Number of successful extensions: 377
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)