Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29p17
(291 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 38 3e-04
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 33 0.006
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 32 0.020
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 31 0.026
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 28 0.24
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 27 0.42
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 0.42
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 0.56
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 0.56
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 25 2.2
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 25 2.2
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 2.2
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 3.0
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 24 3.9
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 24 3.9
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 23 6.9
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 23 6.9
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 23 9.1
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 37.9 bits (84), Expect = 3e-04
Identities = 14/36 (38%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = +2
Query: 185 QYLLKWKGYKEEESTWEPVENL-DCEELIKTFEEKK 289
+Y +KW GY ++TWEP +NL E+++K ++++K
Sbjct: 39 EYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKRK 74
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 33.5 bits (73), Expect = 0.006
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 188 YLLKWKGYKEEESTWEPVENLD-CEELIKTFEEKK 289
Y ++W Y TWEP ENL C ++ ++ +K
Sbjct: 27 YRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRK 61
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 31.9 bits (69), Expect = 0.020
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 185 QYLLKWKGYKE-EESTWEPVEN-LDCEELIKTFEEKK 289
QY LKW+GY + ++TW E+ C ELI + E +
Sbjct: 194 QYYLKWEGYDDPSDNTWNDEEDCAGCLELIDAYWESR 230
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 31.5 bits (68), Expect = 0.026
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 176 GKIQYLLKWKGYKE-EESTWEPVENLD-CEELIKTF 277
G +YLLKW+GY + ++TW + C++LI+ +
Sbjct: 96 GGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAY 131
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 28.3 bits (60), Expect = 0.24
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 176 GKIQYLLKWKGYKEEESTWEP---VENLDCEELIKTFEEKK 289
G ++YL+KWK + TWE +E + E I+ F+E++
Sbjct: 302 GSVEYLVKWKQLLYDFCTWEASSIIEPIAATE-IQAFQERE 341
Score = 27.9 bits (59), Expect = 0.32
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 185 QYLLKWKGYKEEESTWEPVENL 250
++L+KW + TWEP N+
Sbjct: 215 EFLIKWVNFSHLHCTWEPYNNI 236
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 27.5 bits (58), Expect = 0.42
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 257 HSLSFQQAPKYSLPPYSLSISINIGSF 177
H+LS+Q A +Y+LP + IS GSF
Sbjct: 387 HNLSYQLARQYALPVKGVFISEPAGSF 413
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 27.5 bits (58), Expect = 0.42
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 198 FNKYWI-FPLTVRLLRTFSTTYSSSLDASLVSVFFSFL 88
F +YW FPLT + +FS T LD +L + FSF+
Sbjct: 749 FLQYWYWFPLTHFMSLSFSPTALIGLDKNLNAPKFSFI 786
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 27.1 bits (57), Expect = 0.56
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 173 KGKIQYLLKWKGYKEEESTWEPVENL 250
K QYL+KW+ +TWE L
Sbjct: 227 KSSYQYLIKWQEVSHLHNTWEDYSTL 252
Score = 26.6 bits (56), Expect = 0.74
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 173 KGKIQYLLKWKGYKEEESTWEPVE 244
+GK +Y +KW+ + TWE +
Sbjct: 317 EGKTEYFVKWRQLPYDNCTWEDAD 340
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 27.1 bits (57), Expect = 0.56
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 189 YWIFPLTVRLLRTFSTTYSSSLDASLVSVFF 97
+WIFP+ V+ +R + S ++ +++FF
Sbjct: 460 FWIFPIAVQFMRGITVGVIGSSGSAQLAIFF 490
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 2.2
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 290 FFFLQKF*SVPHSLSFQQAPKYSLPPYSLSIS-INIGSFL 174
F LQ ++P S++ ++ PK+ PP + ++ ++ G FL
Sbjct: 204 FECLQDVSTLPPSMTLEKDPKFPQPPSAAEVAVVHDGPFL 243
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 25.0 bits (52), Expect = 2.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 167 TVKGKIQYLLKWKGYKEEESTWEPVENLD 253
++K +L KWK + S +PV+NLD
Sbjct: 195 SIKSLTTWLPKWKKNDFKTSNSQPVKNLD 223
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 2.2
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -2
Query: 152 LSPRHILPRSMLH--WSPFSSLFYPCCA 75
+SP H L+ W+PFS L Y CA
Sbjct: 242 ISPLHTQSTDKLYTIWTPFSELHYFYCA 269
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 24.6 bits (51), Expect = 3.0
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +2
Query: 155 LNKRTVKGKIQYLLKWKGYKEEESTW 232
+ ++ +K QY +KW G + +TW
Sbjct: 826 IGRQKLKKSFQYEIKWFGKPHKYNTW 851
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 24.2 bits (50), Expect = 3.9
Identities = 7/29 (24%), Positives = 17/29 (58%)
Frame = -3
Query: 121 CFTGLRFLLFFTHAVLRKSGTFSQNHENS 35
C G+ ++LF+TH + + + S +++
Sbjct: 18 CILGIAYILFWTHRISKAFASVSSTSDST 46
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 24.2 bits (50), Expect = 3.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +2
Query: 209 YKEEESTWEPVENLDCEELIKTF 277
Y+++++ +EP ENL+ +EL + F
Sbjct: 60 YQKDKNIYEPKENLEEKELSEGF 82
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 188 YLLKWKGYKEEESTWEPVENLDCEELIKTFEE 283
Y +K K Y +E +P ++++KTF+E
Sbjct: 297 YEIKTKLYLIQEGVRDPFSGSRWQKIVKTFKE 328
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 23.4 bits (48), Expect = 6.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = +2
Query: 167 TVKGKIQYLLKWKGYKEEESTWEPVENLDCEELI------KTFEEKK 289
T++ +IQYL K +E EP CE L+ KT E++K
Sbjct: 259 TIEERIQYLQKEIELIQELHEMEPENRWCCESLVNYEALCKTLEKQK 305
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 23.0 bits (47), Expect = 9.1
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -1
Query: 198 FNKYWIFPLTVRLLRTFSTTYSSSLDASLVSVFFSFLPMLC 76
F +I + L T + Y S D+ + FLP LC
Sbjct: 239 FTYEYISSEKTKYLDTIAQDYKGSADSYTDHIGLKFLPRLC 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,107,577
Number of Sequences: 5004
Number of extensions: 20303
Number of successful extensions: 68
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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