Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29p17
(291 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical pr... 59 6e-10
AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromat... 59 6e-10
Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical pr... 53 4e-08
Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical pr... 53 4e-08
Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical pr... 53 4e-08
AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain... 53 4e-08
AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain... 53 4e-08
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 45 1e-05
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 42 1e-04
U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical pr... 34 0.020
U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical pr... 32 0.060
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 32 0.079
Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical pr... 31 0.10
AF047655-11|AAC04405.1| 336|Caenorhabditis elegans Seven tm rec... 30 0.32
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 0.73
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 1.7
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 1.7
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 27 1.7
AC026301-8|AAK68889.1| 302|Caenorhabditis elegans Hypothetical ... 27 1.7
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 27 2.2
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 27 2.2
U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical pr... 26 3.9
AC084197-37|AAG23463.1| 422|Caenorhabditis elegans Hypothetical... 26 3.9
AC006834-8|AAF40006.1| 865|Caenorhabditis elegans Hypothetical ... 26 5.2
AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical ... 25 6.8
U80027-22|AAC48112.1| 336|Caenorhabditis elegans Seven tm recep... 25 9.1
>Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical
protein K08H2.6 protein.
Length = 184
Score = 58.8 bits (136), Expect = 6e-10
Identities = 20/44 (45%), Positives = 33/44 (75%)
Frame = +2
Query: 155 LNKRTVKGKIQYLLKWKGYKEEESTWEPVENLDCEELIKTFEEK 286
LNKR +G +Y +KW+G+ E E +WEP+ENL C+ +I+ +E++
Sbjct: 43 LNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEYEKE 86
>AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromatin
protein 1 homolog protein.
Length = 184
Score = 58.8 bits (136), Expect = 6e-10
Identities = 20/44 (45%), Positives = 33/44 (75%)
Frame = +2
Query: 155 LNKRTVKGKIQYLLKWKGYKEEESTWEPVENLDCEELIKTFEEK 286
LNKR +G +Y +KW+G+ E E +WEP+ENL C+ +I+ +E++
Sbjct: 43 LNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEYEKE 86
>Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical
protein K01G5.2c protein.
Length = 303
Score = 52.8 bits (121), Expect = 4e-08
Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = +2
Query: 155 LNKRTVK-GKIQYLLKWKGYKEEESTWEPVENLDCEELIKTFEEK 286
L+KRT K G+ ++L++W+G+ E +S+WEP ENL C E++ FE +
Sbjct: 25 LDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical
protein K01G5.2b protein.
Length = 301
Score = 52.8 bits (121), Expect = 4e-08
Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = +2
Query: 155 LNKRTVK-GKIQYLLKWKGYKEEESTWEPVENLDCEELIKTFEEK 286
L+KRT K G+ ++L++W+G+ E +S+WEP ENL C E++ FE +
Sbjct: 25 LDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical
protein K01G5.2a protein.
Length = 175
Score = 52.8 bits (121), Expect = 4e-08
Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = +2
Query: 155 LNKRTVK-GKIQYLLKWKGYKEEESTWEPVENLDCEELIKTFEEK 286
L+KRT K G+ ++L++W+G+ E +S+WEP ENL C E++ FE +
Sbjct: 25 LDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain
protein protein.
Length = 175
Score = 52.8 bits (121), Expect = 4e-08
Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = +2
Query: 155 LNKRTVK-GKIQYLLKWKGYKEEESTWEPVENLDCEELIKTFEEK 286
L+KRT K G+ ++L++W+G+ E +S+WEP ENL C E++ FE +
Sbjct: 25 LDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain
protein protein.
Length = 301
Score = 52.8 bits (121), Expect = 4e-08
Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = +2
Query: 155 LNKRTVK-GKIQYLLKWKGYKEEESTWEPVENLDCEELIKTFEEK 286
L+KRT K G+ ++L++W+G+ E +S+WEP ENL C E++ FE +
Sbjct: 25 LDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = +2
Query: 179 KIQYLLKWKGYKEEESTWEPVENLD-CEELIKTFEEK 286
K YL+ W+GY +E TWEP ENL+ CEEL K F+E+
Sbjct: 48 KYAYLVHWRGYDWKERTWEPEENLENCEELQK-FKER 83
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 155 LNKRTVKGKIQYLLKWKGYKEEESTWEPVENLDCEELIKTF 277
L R KGK ++ +KW GY ++WEP EN+ LI+ F
Sbjct: 14 LEHRKKKGKSEFYIKWLGYDHTHNSWEPKENIVDPTLIEAF 54
>U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical
protein C29H12.5 protein.
Length = 706
Score = 33.9 bits (74), Expect = 0.020
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 188 YLLKWKGYKEEESTWEPVENLDCEELIKTFEEKK 289
+L+KW GY +E TWEP N+ + + +E KK
Sbjct: 95 FLVKWLGYGNKEMTWEPESNI--PDSVYLYEYKK 126
>U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical
protein F32E10.2 protein.
Length = 270
Score = 32.3 bits (70), Expect = 0.060
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +2
Query: 155 LNKRTVKGKIQYLLKWKGYKE---EESTWEPVENLD-CEELIKTFEE 283
L R VKG YL++WKGY WE E+LD C++L+ +++
Sbjct: 93 LAHRKVKGSPLYLVQWKGYPHPVWNSEMWE--EDLDNCKDLLAAYKK 137
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 31.9 bits (69), Expect = 0.079
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 191 LLKWKGYKEEESTWEPVENLDCEEL 265
L+KWK EE TWEP+E + +++
Sbjct: 1123 LIKWKSLGYEEVTWEPIEMIPADKV 1147
>Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical
protein T09A5.8 protein.
Length = 339
Score = 31.5 bits (68), Expect = 0.10
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 194 LKWKGYKEEESTWEPVENL-DC-EELIKTFEEK 286
++W GY +E TWEP E+L +C E++ + +K
Sbjct: 43 VRWLGYGADEDTWEPEEDLQECASEVVAEYYKK 75
>AF047655-11|AAC04405.1| 336|Caenorhabditis elegans Seven tm
receptor protein 63 protein.
Length = 336
Score = 29.9 bits (64), Expect = 0.32
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 257 HSLSFQQAPKYSLPPYSLSISINIGSF 177
+ L + PKY++ PY+L S+N G+F
Sbjct: 170 YQLLISELPKYNITPYNLDGSVNWGNF 196
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 0.73
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 185 QYLLKWKGYKEEESTWEPVENLDCEELIKTF 277
+YL+KW G + TWE E + E IK +
Sbjct: 333 EYLIKWSGLPYSDCTWED-EKMVAPEQIKAY 362
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 173 KGKIQYLLKWKGYKEEESTWEPVENL 250
K + Q+ +KW G+ +TWE +L
Sbjct: 234 KTEQQFFVKWTGWSHLHNTWESENSL 259
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 173 KGKIQYLLKWKGYKEEESTWE 235
K + YL+KWK E +TWE
Sbjct: 514 KSQQDYLVKWKELSYEHATWE 534
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 173 KGKIQYLLKWKGYKEEESTWE 235
K + YL+KWK E +TWE
Sbjct: 514 KSQQDYLVKWKELSYEHATWE 534
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 173 KGKIQYLLKWKGYKEEESTWE 235
K + YL+KWK E +TWE
Sbjct: 514 KSQQDYLVKWKELSYEHATWE 534
>AC026301-8|AAK68889.1| 302|Caenorhabditis elegans Hypothetical
protein Y54F10BM.10 protein.
Length = 302
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 179 KIQYLLKWKGYKEEESTWEPVENLDCEEL 265
KI YL +WK K + EP+EN+ E+L
Sbjct: 190 KITYLEQWKLTKSFKYFGEPLENIPLEKL 218
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 173 KGKIQYLLKWKGYKEEESTWE 235
K + YL+KWK +++TWE
Sbjct: 502 KSQQDYLVKWKELSYDQATWE 522
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 173 KGKIQYLLKWKGYKEEESTWE 235
K + YL+KWK +++TWE
Sbjct: 502 KSQQDYLVKWKELSYDQATWE 522
>U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical
protein F32E10.6 protein.
Length = 374
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 173 KGKIQYLLKWKGYKEEESTWEPVEN--LDCEELIKTFEE 283
K K +L+ W+GY S E EN +C++L++ +++
Sbjct: 129 KNKPLFLVMWRGYPNPVSHSEMWENELSNCKDLLEAYKD 167
>AC084197-37|AAG23463.1| 422|Caenorhabditis elegans Hypothetical
protein Y73B6BL.25 protein.
Length = 422
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 167 TVKGKIQYLLKWKGYKEEESTWEPVENLDCEEL 265
T+ I + K K+ + W+PV+N D EL
Sbjct: 143 TISDPILRMYSVKSCKKSDEVWKPVDNDDLPEL 175
>AC006834-8|AAF40006.1| 865|Caenorhabditis elegans Hypothetical
protein ZK973.2 protein.
Length = 865
Score = 25.8 bits (54), Expect = 5.2
Identities = 7/23 (30%), Positives = 18/23 (78%)
Frame = +2
Query: 179 KIQYLLKWKGYKEEESTWEPVEN 247
++++L+ W+ ++ ++WEP+EN
Sbjct: 65 RVEFLVLWQA--DKSTSWEPIEN 85
>AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical
protein K06A5.1 protein.
Length = 629
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 179 KIQYLLKWKGYKEEESTWEPVEN 247
++++L+ W+ K + +WEP+EN
Sbjct: 9 RVEFLVLWEADKSK--SWEPIEN 29
>U80027-22|AAC48112.1| 336|Caenorhabditis elegans Seven tm receptor
protein 64 protein.
Length = 336
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 257 HSLSFQQAPKYSLPPYSLSISINIGSF 177
+ L + KY++ PY+ S+N G+F
Sbjct: 170 YQLLISELSKYNITPYNFDGSVNWGNF 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,938,081
Number of Sequences: 27780
Number of extensions: 105976
Number of successful extensions: 347
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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