Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p17
         (291 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    47   4e-08
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   4.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   4.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.1  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 47.2 bits (107), Expect = 4e-08
 Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = +2

Query: 155 LNKRTVKGKIQYLLKWKGYKEEESTWEPVENL-DCEELIKTFEEKK 289
           L K+ +KG   YL+KWK +  + +TWEP+ NL +C ++++ FE  +
Sbjct: 250 LAKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSDILEEFERNR 295


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = -2

Query: 128 RSMLHWSPF 102
           R+++HW+PF
Sbjct: 223 RNIVHWTPF 231


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = -2

Query: 128 RSMLHWSPF 102
           R+++HW+PF
Sbjct: 138 RNIVHWTPF 146


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = -2

Query: 128 RSMLHWSPF 102
           R+++HW+PF
Sbjct: 457 RNIVHWTPF 465


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -2

Query: 149 SPRHILPRSMLHWSPFSSLFYPCCAKKERH 60
           S R   P  +LH +P    FY   +  + H
Sbjct: 879 SVRPFAPLLLLHLTPLQPRFYSISSSPDVH 908


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,814
Number of Sequences: 438
Number of extensions: 1449
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)