Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p13
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    58   1e-09
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    28   1.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   4.5  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    26   5.9  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    26   5.9  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   7.9  

>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
 Frame = +3

Query: 159 ADHGVLIHAGECIILFSDNVSVEFYGNDTPEFKG--IKEGRMYLTTHRMIYNSKKNTDAM 332
           ++  +L+   EC+    D V++       P  K     +G + LT  R++Y +K      
Sbjct: 12  SESDILLLENECMFDCFDGVAISILCKP-PSLKSWTCTKGLLCLTNQRLVYIAKDTDCDF 70

Query: 333 RSFSFPFIALQDVTVEQPMFSANCIKGKVRAQPNGNFIGEVKFKLTFKSGGAIEYGQA 506
           + F  P   L+D  + QP F AN   G V   PNG    E + KL F  GG   + +A
Sbjct: 71  KDFQSPVANLKDTKLNQPFFGANYYSGTVMPVPNGGIPCEAEVKLQFNEGGIFNFVEA 128


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 144 LNTAHADHGVLIHAGECII--LFSDNVSVEFYGNDT 245
           LN A +D G  I A +  +  L S N  +EFYG+DT
Sbjct: 114 LNIAESDTGSSIEAQDSWVYQLNSFNKKIEFYGDDT 149


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 102  LNVIYNQHNNCIMSLNTAHADHGVLIHAGECI-ILFSDNVS 221
            L+ + NQ    + S+N   ADH  L+ A EC  IL +D+ S
Sbjct: 1396 LHELVNQFLTGVASINHPIADHVFLLCAQECCRILLTDSKS 1436


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 246 PEFK-GIKEGRMYLTTHRMIYNSKKNTDAMRSFSFP 350
           PEF+ G+ EGR   +    +Y  +K  + ++SF+ P
Sbjct: 271 PEFQLGVWEGRNMYSFFAFMYVDEKEWEKLKSFNVP 306


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = -3

Query: 684 LVEVGLEKQNKVAPIHNIL--VEEVHMLVVVRLATVQS-----VGYKEVAKHQLPYDEKQ 526
           L E+ +E   ++AP  NI+  + +   L    L T +      + Y ++  +  PYD ++
Sbjct: 178 LRELDIELMRRLAPRVNIIPAIAKADSLTAQELQTTKEMINADIEYYKIPVYDFPYDIEE 237

Query: 525 DEQLL 511
           DE+ +
Sbjct: 238 DEEAI 242


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 594 LATVQSVGYKEVAKHQLPYDEKQDEQLLT 508
           LAT +  G KE+    LP  E  DE++ T
Sbjct: 412 LATAEKHGLKELENGTLPVTESVDEEVST 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,151
Number of Sequences: 5004
Number of extensions: 51734
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)