Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p13
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40413-2|AAK39174.1|  296|Caenorhabditis elegans Hypothetical pr...   131   4e-31
Z47808-4|CAA87772.1|  235|Caenorhabditis elegans Hypothetical pr...   109   2e-24
AL110490-4|CAB54450.1|  474|Caenorhabditis elegans Hypothetical ...    29   4.2  
U70855-5|AAB09160.2|  886|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U55857-10|AAA98035.2|  895|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>U40413-2|AAK39174.1|  296|Caenorhabditis elegans Hypothetical
           protein C18B2.4 protein.
          Length = 296

 Score =  131 bits (317), Expect = 4e-31
 Identities = 60/135 (44%), Positives = 94/135 (69%), Gaps = 2/135 (1%)
 Frame = +3

Query: 138 MSLNTAHAD--HGVLIHAGECIILFSDNVSVEFYGNDTPEFKGIKEGRMYLTTHRMIYNS 311
           MSLNT+H     G+LI+ GE I+L++ NV ++F   + P FK  K G +YLT+HR+I+ +
Sbjct: 1   MSLNTSHTPDGQGILIYNGEMILLYTTNVKLKFEKYNVPAFKSTKSGALYLTSHRIIFMN 60

Query: 312 KKNTDAMRSFSFPFIALQDVTVEQPMFSANCIKGKVRAQPNGNFIGEVKFKLTFKSGGAI 491
           +   D  +SF+ PF +++DV +EQP+ + N +KG V+  P GNF G  +++L+F  GG I
Sbjct: 61  ESKKDEFKSFAMPFNSVRDVKLEQPLLTPNYLKGWVQPMPGGNFDGCPEWRLSFPKGGCI 120

Query: 492 EYGQAMLKAAHLASR 536
           E+G+A+L+AA +ASR
Sbjct: 121 EFGEALLRAADMASR 135


>Z47808-4|CAA87772.1|  235|Caenorhabditis elegans Hypothetical
           protein D2013.6 protein.
          Length = 235

 Score =  109 bits (262), Expect = 2e-24
 Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 2/187 (1%)
 Frame = +3

Query: 138 MSLNTAHADHG--VLIHAGECIILFSDNVSVEFYGNDTPEFKGIKEGRMYLTTHRMIYNS 311
           MS+NTA+   G  VL++ GE I++F+  V +    ++    +G + G +YLT+HR+I+  
Sbjct: 1   MSINTANTPDGLGVLLYNGETIVIFAQGVVMTLGTSENENLEGRRTGTIYLTSHRIIFMP 60

Query: 312 KKNTDAMRSFSFPFIALQDVTVEQPMFSANCIKGKVRAQPNGNFIGEVKFKLTFKSGGAI 491
               D ++SF  PF ++QDV + QP+F AN + G   A   G   GEVK+++TF  GG I
Sbjct: 61  DPG-DWLKSFEIPFNSMQDVNLNQPIFGANYLCGIASAVQGGQMRGEVKWRMTFNRGGCI 119

Query: 492 EYGQAMLKAAHLASRHMAAGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPYSAFPD 671
           E+GQ++L+A   A R     A                               P   +FPD
Sbjct: 120 EFGQSLLQAVERAVRMRPENAPPAYSPPIGDFYSAPPAYYQPSPDQGPNGFNPTTDSFPD 179

Query: 672 QPPPNSV 692
           QP P+ V
Sbjct: 180 QPNPSRV 186


>AL110490-4|CAB54450.1|  474|Caenorhabditis elegans Hypothetical
           protein Y48B6A.4 protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 576 VGYKEVAKHQLPYDEKQDEQLLTW 505
           +GY +V K +L  DE+++E++L W
Sbjct: 408 IGYLKVFKAKLDDDEEEEEEILNW 431


>U70855-5|AAB09160.2|  886|Caenorhabditis elegans Hypothetical
           protein K08F11.2 protein.
          Length = 886

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +3

Query: 201 LFSDNVSVEFYGNDTPEFKGIKEG----RMYLTTHRMIYNS-KKNTDAMRSFS 344
           L+S + SV  + N+TP  KGI+E     RM L     I +S  +N DA+ S S
Sbjct: 129 LYSSSDSVGVFSNETPYVKGIREDLSRERMRLLEVDSILDSISENLDAILSSS 181


>U55857-10|AAA98035.2|  895|Caenorhabditis elegans Hypothetical
           protein K08D10.1 protein.
          Length = 895

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +3

Query: 201 LFSDNVSVEFYGNDTPEFKGIKEG----RMYLTTHRMIYNS-KKNTDAMRSFS 344
           L+S + SV  + N+TP  KGI+E     RM L     I +S  +N DA+ S S
Sbjct: 129 LYSSSDSVGVFSNETPYVKGIREDLSRERMRLLEVDSILDSISENLDAILSSS 181


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 132 CIMSLNTAHADHGVLIHAGE-CIILFSDNVSVEFYGNDTPEF 254
           C+  +  AHAD   L+H GE C    +D + V++     P F
Sbjct: 102 CVDEVAAAHADCTALVHFGEACHSAPTDKIDVKYVLGSMPIF 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,512,501
Number of Sequences: 27780
Number of extensions: 286287
Number of successful extensions: 656
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)