Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p12
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    26   2.5  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    25   3.3  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   4.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    24   7.6  

>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 124 GSHYWRYDXHRCAXRKLFKQANSKHVFD 207
           G HYW Y    C   +L K +  K  +D
Sbjct: 203 GGHYWGYKVRSCLSSQLCKSSPYKGGYD 230


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 187 NSKHVFDHFGCSNNYCFNNYV 249
           N   VF+H  CS  Y FNN V
Sbjct: 2   NGLRVFEHVHCSVLYKFNNIV 22


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 127 ILCKSYYYYTESGINNL 77
           IL K+YYY  ESG +N+
Sbjct: 222 ILTKTYYYMEESGPSNV 238


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 119  TQDPTTGATTSTDVQXANYLNRLT 190
            T+ P+ G  T TD Q  N+LNR++
Sbjct: 1613 TRTPSLGIYT-TDAQLRNFLNRIS 1635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,192,203
Number of Sequences: 5004
Number of extensions: 17324
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)