Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p12
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    32   0.13 
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       32   0.13 
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       32   0.13 
AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical ...    27   3.7  
Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +1

Query: 88  SPTRYNNNMIYTGSHYWRYDXHRCAXRKLFKQANSKHVFDHFGCSNNYCFNNYVCSI 258
           +P + N   I+     W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 556 NPCKNNGTCIFV----WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +1

Query: 88  SPTRYNNNMIYTGSHYWRYDXHRCAXRKLFKQANSKHVFDHFGCSNNYCFNNYVCSI 258
           +P + N   I+     W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 556 NPCKNNGTCIFV----WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +1

Query: 88  SPTRYNNNMIYTGSHYWRYDXHRCAXRKLFKQANSKHVFDHFGCSNNYCFNNYVCSI 258
           +P + N   I+     W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 556 NPCKNNGTCIFV----WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical
           protein F14F4.1 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 157 CAXRKLFKQANSKHVFDHFGCSNNYCFNN 243
           C  R+ F +   K  F++F CS+    NN
Sbjct: 336 CRSRRSFTEVTKKRSFENFECSSTATMNN 364


>Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical
           protein T19C9.1 protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 205 DHFGCSNNYCFNNYVCSI 258
           DHF C+ N CF +Y  S+
Sbjct: 158 DHFKCTVNACFYSYTLSV 175


>AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical
           protein F08E10.2 protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 205 DHFGCSNNYCFNNYVCSI 258
           DHF C+ N CF +Y  S+
Sbjct: 158 DHFKCTVNACFYSYTLSV 175


>Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical
           protein F54B8.8 protein.
          Length = 285

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 205 DHFGCSNNYCFNNY 246
           D+F C  N CFNNY
Sbjct: 162 DNFHCMINQCFNNY 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,541,988
Number of Sequences: 27780
Number of extensions: 99472
Number of successful extensions: 235
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)