Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p07
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    27   2.1  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   3.6  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    26   6.4  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.4  
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    25   8.4  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   8.4  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    25   8.4  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   8.4  

>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 335 VIETAGQGLRRAHYIHPAVPQDGETTTGSHATLMAPRCTFPQSGRGNAV 481
           V++   Q  +      P  P + E T    A L+AP  ++P+SG+ N +
Sbjct: 110 VLQQIAQSSKTLKQTEPEKPVNEEETL---AALLAPALSYPKSGKSNLI 155


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -2

Query: 358 TLSRRLNNSDWAPAQSGLGRRLWAAS--FSEVQLYIPHPLRGWGSG 227
           TL+     + W P Q G+G      S  F  ++L IP  L GW  G
Sbjct: 770 TLTTSSQLTKWYPIQGGIGFGSVRISILFRSMKLKIPRNLLGWDIG 815


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 619 PRFHDDNTSKRLHILPVTYSKFRRLIN 699
           P++HD+N ++R+ +   T +K  R +N
Sbjct: 25  PQYHDENATERVLVSAETLNKTARRLN 51


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 280 NLPPT--GGALTRTGPEPSRSY*DGGTGFTQSTLHPSRCPPGRRN 408
           +LPPT      T + PEP+RS  D    FT  +  P+   PG RN
Sbjct: 471 DLPPTFERSNSTFSHPEPTRS--DFSQAFTPVSDFPANLFPGSRN 513


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +3

Query: 99  VNYCDVRFDLSLEFVSLNQGVHETAKEKSLTRTH*FGTIMRKSPDPHPRSGWGM*S*TSL 278
           V YC V FDL+      N G  ++    SL R      I  KS +     GW   S ++ 
Sbjct: 84  VAYCPVDFDLT------NYGFADSKTLASLKREELLKLICNKSNELGKNVGWSTMSISAR 137

Query: 279 KLAA 290
           +LAA
Sbjct: 138 ELAA 141


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +2

Query: 314 LGRSPVGVIETAGQGLRRAHYIHPAVPQDGETTTGSHATLMAPRCTFPQSGRG 472
           +G++     ET     R  HY+ PA+ +  +   G        R  F  +G G
Sbjct: 161 IGKNLQQQYETLSMRTRYRHYLDPAIEEVKKLCIGQRRNAKEERILFHYNGHG 213


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +3

Query: 144 SLNQGVHETAKEKSLTRTH*FGTIMRKSP-----DPHPRSGWG 257
           +LN GV  + +E  L  T+ FGT  ++ P     +  P+ G+G
Sbjct: 60  ALNHGVERSKREGILELTYNFGTEKKEGPVYINGNTEPKRGFG 102


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 649 FLTCCHHESEAGAQHVHDN 593
           +L CC+HES+   +H   N
Sbjct: 106 YLFCCNHESDHSRKHFEKN 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,695
Number of Sequences: 5004
Number of extensions: 68540
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)