Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p07
         (731 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC029806-1|AAH29806.1|  162|Homo sapiens keratinocyte associated...    33   0.80 
AL607067-2|CAH71196.1|  162|Homo sapiens keratinocyte associated...    33   0.80 
BC070062-1|AAH70062.1|  908|Homo sapiens RIN3 protein protein.         32   1.8  
BC025248-1|AAH25248.2|  657|Homo sapiens RIN3 protein protein.         32   1.8  
AK128338-1|BAC87390.1|  909|Homo sapiens protein ( Homo sapiens ...    32   1.8  
AK127518-1|BAC87015.1|  178|Homo sapiens protein ( Homo sapiens ...    32   1.8  
AK090451-1|BAC03432.1|  396|Homo sapiens FLJ00372 protein protein.     32   1.8  
AB081753-1|BAC16513.1|  985|Homo sapiens RIN3 protein.                 32   1.8  
AB060338-1|BAB84316.1|  525|Homo sapiens RIN3 protein.                 32   1.8  
BC132918-1|AAI32919.1|  317|Homo sapiens similar to 4931415M17 p...    31   4.3  
BC132916-1|AAI32917.1|  317|Homo sapiens similar to 4931415M17 p...    31   4.3  
AK097419-1|BAC05044.1|  271|Homo sapiens protein ( Homo sapiens ...    31   4.3  
BC022782-1|AAH22782.1|  780|Homo sapiens bromo adjacent homology...    30   7.4  
BC017446-1|AAH17446.1|  270|Homo sapiens Unknown (protein for IM...    30   7.4  
AE006465-11|AAK61265.1|  436|Homo sapiens unknown protein.             30   7.4  
AB023162-1|BAA76789.2|  797|Homo sapiens KIAA0945 protein protein.     30   7.4  
BC057233-1|AAH57233.1|  162|Homo sapiens keratinocyte associated...    30   9.8  

>BC029806-1|AAH29806.1|  162|Homo sapiens keratinocyte associated
           protein 2 protein.
          Length = 162

 Score = 33.5 bits (73), Expect = 0.80
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -2

Query: 478 RVTPTALGEGAAWRHQRG---VGTGGRFAVLGDSGMDVMCSA*TLSRRLNNSDWAPAQSG 308
           R +   L  GA W H RG   VGTG   A+     + +       SR+L +++W   Q G
Sbjct: 8   RFSSPFLARGAGWTHGRGMMVVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGG 67

Query: 307 L 305
           L
Sbjct: 68  L 68


>AL607067-2|CAH71196.1|  162|Homo sapiens keratinocyte associated
           protein 2 protein.
          Length = 162

 Score = 33.5 bits (73), Expect = 0.80
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -2

Query: 478 RVTPTALGEGAAWRHQRG---VGTGGRFAVLGDSGMDVMCSA*TLSRRLNNSDWAPAQSG 308
           R +   L  GA W H RG   VGTG   A+     + +       SR+L +++W   Q G
Sbjct: 8   RFSSPFLARGAGWTHGRGMMVVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGG 67

Query: 307 L 305
           L
Sbjct: 68  L 68


>BC070062-1|AAH70062.1|  908|Homo sapiens RIN3 protein protein.
          Length = 908

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 378 SIPLSPRTAKRPPVPTPR 431
           S+P  PRTAK+PPVP PR
Sbjct: 369 SMPELPRTAKQPPVPPPR 386


>BC025248-1|AAH25248.2|  657|Homo sapiens RIN3 protein protein.
          Length = 657

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 378 SIPLSPRTAKRPPVPTPR 431
           S+P  PRTAK+PPVP PR
Sbjct: 118 SMPELPRTAKQPPVPPPR 135


>AK128338-1|BAC87390.1|  909|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46480 fis, clone THYMU3025683, weakly  similar
           to Ras interaction/interference protein 1. ).
          Length = 909

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 378 SIPLSPRTAKRPPVPTPR 431
           S+P  PRTAK+PPVP PR
Sbjct: 370 SMPELPRTAKQPPVPPPR 387


>AK127518-1|BAC87015.1|  178|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45611 fis, clone BRTHA3024600. ).
          Length = 178

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 500 RKPGDGRPRYPDRSGGRCSVAPST-WRGNRWSFRRPGGQRDG 378
           R+P       P RSGGR   AP+T WRG R + R     R G
Sbjct: 57  RQPPTAPRGGPQRSGGRAPAAPTTLWRGGRSTRRDETSLRSG 98


>AK090451-1|BAC03432.1|  396|Homo sapiens FLJ00372 protein protein.
          Length = 396

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 378 SIPLSPRTAKRPPVPTPR 431
           S+P  PRTAK+PPVP PR
Sbjct: 41  SMPELPRTAKQPPVPPPR 58


>AB081753-1|BAC16513.1|  985|Homo sapiens RIN3 protein.
          Length = 985

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 378 SIPLSPRTAKRPPVPTPR 431
           S+P  PRTAK+PPVP PR
Sbjct: 445 SMPELPRTAKQPPVPPPR 462


>AB060338-1|BAB84316.1|  525|Homo sapiens RIN3 protein.
          Length = 525

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 378 SIPLSPRTAKRPPVPTPR 431
           S+P  PRTAK+PPVP PR
Sbjct: 11  SMPELPRTAKQPPVPPPR 28


>BC132918-1|AAI32919.1|  317|Homo sapiens similar to 4931415M17
           protein protein.
          Length = 317

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 355 GFTQSTLHPSRCPPGRRNDHR 417
           GFT  T HP  CPPGR+ D R
Sbjct: 129 GFTPDTPHPP-CPPGRKGDSR 148


>BC132916-1|AAI32917.1|  317|Homo sapiens similar to 4931415M17
           protein protein.
          Length = 317

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 355 GFTQSTLHPSRCPPGRRNDHR 417
           GFT  T HP  CPPGR+ D R
Sbjct: 129 GFTPDTPHPP-CPPGRKGDSR 148


>AK097419-1|BAC05044.1|  271|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40100 fis, clone TESTI2004675. ).
          Length = 271

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 355 GFTQSTLHPSRCPPGRRNDHR 417
           GFT  T HP  CPPGR+ D R
Sbjct: 129 GFTPDTPHPP-CPPGRKGDSR 148


>BC022782-1|AAH22782.1|  780|Homo sapiens bromo adjacent homology
           domain containing 1 protein.
          Length = 780

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 471 PRPLWGKVQRGAINVAWEPVVVSPSWGTAGWM*CALRKPCPAVSITPTGLRPS 313
           PRP W KV       AW+      + G  GW  C   +P P+ +     ++PS
Sbjct: 245 PRPKWPKVNGKNYPKAWQGASSGEAAGPPGWQGCP-DEPWPSATPCGPSVQPS 296


>BC017446-1|AAH17446.1|  270|Homo sapiens Unknown (protein for
           IMAGE:3503958) protein.
          Length = 270

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
 Frame = -3

Query: 498 EAG*W*TALPRPLWGKVQRGAINVAW----------EPVVVSPSWGTAGWM*CALRKPCP 349
           E G W   +PRP  G  + GA +  W          EP    P W T  W+   L+   P
Sbjct: 4   EWGAWCARVPRPARGPTRGGAQSSGWVTRTPPPSPPEPPQEKPGW-TRSWLPLPLQACPP 62

Query: 348 AVSITPTGLRPS 313
           A+S     L+PS
Sbjct: 63  ALSFWGPRLQPS 74


>AE006465-11|AAK61265.1|  436|Homo sapiens unknown protein.
          Length = 436

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 357 PCPAVSITPTGLRPSPG*GAACGRQVLVRFNSTYPTRCADGDP 229
           PCPA+S TP+    SPG   A GR V ++      +R + G P
Sbjct: 18  PCPALSCTPS---ESPGSPPALGRPVTLQQQLQQKSRVSTGPP 57


>AB023162-1|BAA76789.2|  797|Homo sapiens KIAA0945 protein protein.
          Length = 797

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 471 PRPLWGKVQRGAINVAWEPVVVSPSWGTAGWM*CALRKPCPAVSITPTGLRPS 313
           PRP W KV       AW+      + G  GW  C   +P P+ +     ++PS
Sbjct: 263 PRPKWPKVNGKNYPKAWQGASSGEAAGPPGWQGCP-DEPWPSATPCGPSVQPS 314


>BC057233-1|AAH57233.1|  162|Homo sapiens keratinocyte associated
           protein 2 protein.
          Length = 162

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -2

Query: 478 RVTPTALGEGAAWRHQRG---VGTGGRFAVLGDSGMDVMCSA*TLSRRLNNSDWAPAQSG 308
           R +   L  GA W H RG   VGT    A+     + +       SR+L +++W   Q G
Sbjct: 8   RFSSPFLARGAGWTHGRGMMVVGTVTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGG 67

Query: 307 L 305
           L
Sbjct: 68  L 68


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,802,633
Number of Sequences: 237096
Number of extensions: 3130929
Number of successful extensions: 10874
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10873
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)