Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29p07
(731 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64845-3|AAC48032.2| 312|Caenorhabditis elegans Hypothetical pr... 31 0.84
U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr... 29 2.6
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin... 29 2.6
U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protei... 29 4.5
AF039048-1|AAB94237.2| 480|Caenorhabditis elegans Cell division... 29 4.5
Z79756-1|CAB02120.2| 494|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical pr... 28 7.8
U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 28 7.8
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 7.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 7.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 7.8
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 28 7.8
>U64845-3|AAC48032.2| 312|Caenorhabditis elegans Hypothetical
protein F45F2.11 protein.
Length = 312
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 348 RDRVYAEHITSIPLSPRTAKRPPVPTPR 431
RD Y E S + PR A+RPP+P P+
Sbjct: 207 RDYDYKEKTLSTFIPPRIARRPPIPPPQ 234
>U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical
protein F55D10.1 protein.
Length = 955
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 149 KPRRA*DSKRKKFNKNALIRHNYEKIAGSPSAQRVGYVELNLTKTCR 289
KP R + RKKFN N I++ Y IAG S + Y+ TK R
Sbjct: 557 KPERVHFNNRKKFNTNVEIQNEY-LIAGFDSQGYLSYITEKATKKKR 602
>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 332 GVIETAGQGLRRAHYIHPAVPQDGETTTGSH 424
G +++G GL+ A+ HPA P +T+ SH
Sbjct: 52 GTRKSSGSGLKTANLKHPARPSTESSTSSSH 82
>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 332 GVIETAGQGLRRAHYIHPAVPQDGETTTGSH 424
G +++G GL+ A+ HPA P +T+ SH
Sbjct: 52 GTRKSSGSGLKTANLKHPARPSTESSTSSSH 82
>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1192
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 332 GVIETAGQGLRRAHYIHPAVPQDGETTTGSH 424
G +++G GL+ A+ HPA P +T+ SH
Sbjct: 52 GTRKSSGSGLKTANLKHPARPSTESSTSSSH 82
>U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protein
58 protein.
Length = 305
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 542 CNRDLTCDVHHARNRKPGDGRPRYPDRSGG 453
CNR C++ H + P DG P P SGG
Sbjct: 117 CNR-FYCNLSHNLPQLPDDGEPGVPGSSGG 145
>AF039048-1|AAB94237.2| 480|Caenorhabditis elegans Cell division
cycle related protein25.2 protein.
Length = 480
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 577 ILSSINYHEHAELRPRFHDDNTSKRLHILPVTYSKF 684
I ++IN+ + + F+D+N KR + +P+ Y +F
Sbjct: 263 IKNAINHFDRVTVSKIFYDENGRKRCNKIPIFYCEF 298
>Z79756-1|CAB02120.2| 494|Caenorhabditis elegans Hypothetical
protein F53C11.1 protein.
Length = 494
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 317 GRSPVGVI---ETAGQGLRRAHYIHPAVPQDGETTTGSHATLMAPRCTFPQS 463
G++PVGV T+G G R A+ + +V DG T S + + FP +
Sbjct: 409 GKTPVGVEFNETTSGAGARSANATYMSVTFDGTTVKSSFSFVFNVESLFPST 460
>Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/65 (35%), Positives = 26/65 (40%)
Frame = -1
Query: 524 CDVHHARNRKPGDGRPRYPDRSGGRCSVAPSTWRGNRWSFRRPGGQRDGCNVLCVNPVPP 345
CDV + R KP PR P GG P +RG R GG R G N PP
Sbjct: 313 CDVLNERTSKPNRNNPRGPGGPGG-----PGGYRGGR------GGGRGGSYGNFGNRGPP 361
Query: 344 SQ*LR 330
+R
Sbjct: 362 GANVR 366
>Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/65 (35%), Positives = 26/65 (40%)
Frame = -1
Query: 524 CDVHHARNRKPGDGRPRYPDRSGGRCSVAPSTWRGNRWSFRRPGGQRDGCNVLCVNPVPP 345
CDV + R KP PR P GG P +RG R GG R G N PP
Sbjct: 316 CDVLNERTSKPNRNNPRGPGGPGG-----PGGYRGGR------GGGRGGSYGNFGNRGPP 364
Query: 344 SQ*LR 330
+R
Sbjct: 365 GANVR 369
>Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/65 (35%), Positives = 26/65 (40%)
Frame = -1
Query: 524 CDVHHARNRKPGDGRPRYPDRSGGRCSVAPSTWRGNRWSFRRPGGQRDGCNVLCVNPVPP 345
CDV + R KP PR P GG P +RG R GG R G N PP
Sbjct: 313 CDVLNERTSKPNRNNPRGPGGPGG-----PGGYRGGR------GGGRGGSYGNFGNRGPP 361
Query: 344 SQ*LR 330
+R
Sbjct: 362 GANVR 366
>Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/65 (35%), Positives = 26/65 (40%)
Frame = -1
Query: 524 CDVHHARNRKPGDGRPRYPDRSGGRCSVAPSTWRGNRWSFRRPGGQRDGCNVLCVNPVPP 345
CDV + R KP PR P GG P +RG R GG R G N PP
Sbjct: 316 CDVLNERTSKPNRNNPRGPGGPGG-----PGGYRGGR------GGGRGGSYGNFGNRGPP 364
Query: 344 SQ*LR 330
+R
Sbjct: 365 GANVR 369
>U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate
filament, d protein 2 protein.
Length = 443
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 407 TTTGSHATLMAPRCTFPQSGRGNAVYHHPASYY 505
TT +H T AP PQSG YH S Y
Sbjct: 406 TTVQTHVTYNAPPPPLPQSGPRTTSYHAYGSAY 438
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 371 HYIHPAVPQDGETTTGSHATLMAPRCTFPQSGRGNAVY 484
+YI+P V DG+T S T+ R + P GN +Y
Sbjct: 4142 NYIYPVVGPDGQTDE-SGKTVYPVRGSHPTDDTGNVIY 4178
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 371 HYIHPAVPQDGETTTGSHATLMAPRCTFPQSGRGNAVY 484
+YI+P V DG+T S T+ R + P GN +Y
Sbjct: 4187 NYIYPVVGPDGQTDE-SGKTVYPVRGSHPTDDTGNVIY 4223
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 371 HYIHPAVPQDGETTTGSHATLMAPRCTFPQSGRGNAVY 484
+YI+P V DG+T S T+ R + P GN +Y
Sbjct: 4187 NYIYPVVGPDGQTDE-SGKTVYPVRGSHPTDDTGNVIY 4223
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 330 SELLRRRDRVYAEHITSIPLSPRTAKRPPVPTPR*WRHAAPSPR 461
SELL + EH ++P +P K P P P +A P+
Sbjct: 728 SELLDEQFDASEEHSGTVPSAPELTKNPAPPVPEASEASAEPPK 771
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,592,422
Number of Sequences: 27780
Number of extensions: 441877
Number of successful extensions: 1099
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -