Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p05
         (653 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock p...    25   2.8  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   3.7  
U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    24   4.8  
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    24   4.8  
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    24   4.8  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   4.8  

>AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock
           protein protein.
          Length = 133

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 437 LKVRYPDRITLIRGNHESRQ 496
           + V+Y D   L+ G HE +Q
Sbjct: 29  ISVKYVDNCVLVEGKHEEKQ 48


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 163 IEIARIRHVKTLGHVTMSI--STTVECF 86
           + I RIRH +TLG V   +  +T V C+
Sbjct: 63  LPIQRIRHRQTLGVVAADVGGTTIVSCY 90


>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +2

Query: 536 KYGSITVW-RYCTEIFDYLSLSAIIDGRIFCVHGGLS 643
           KY S   W RY  E       S ++DG I C    ++
Sbjct: 611 KYLSYLSWFRYANEALLINQWSTVVDGEIACTRANVT 647


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +2

Query: 536 KYGSITVW-RYCTEIFDYLSLSAIIDGRIFCVHGGLS 643
           KY S   W RY  E       S ++DG I C    ++
Sbjct: 611 KYLSYLSWFRYANEALLINQWSTVVDGEIACTRANVT 647


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +2

Query: 536 KYGSITVW-RYCTEIFDYLSLSAIIDGRIFCVHGGLS 643
           KY S   W RY  E       S ++DG I C    ++
Sbjct: 589 KYLSYLSWFRYANEALLINQWSTVVDGEIACTRANVT 625


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 521 DECLRKYGSITVWRYCTEI 577
           DEC + YG   +W  C  +
Sbjct: 153 DECHKNYGRQELWEICARL 171


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,979
Number of Sequences: 2352
Number of extensions: 14619
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)