Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p05
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.9  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -2

Query: 514 TINLCD--LSRFMISSDECYAIWI 449
           T+  CD   S F I  DEC  +WI
Sbjct: 238 TVGNCDGLTSVFRIQVDECDRLWI 261


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 184 FQLFDLTIEIARIRHVKTLGHVTMSIS 104
           + LFD   E  R+  V+T+G   M +S
Sbjct: 453 YSLFDTLTERNRVYKVETIGDAYMVVS 479


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 552  LCGDTVQKYLTIYH 593
            LCG+T Q YLT ++
Sbjct: 1466 LCGNTYQLYLTSHN 1479


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 552  LCGDTVQKYLTIYH 593
            LCG+T Q YLT ++
Sbjct: 1462 LCGNTYQLYLTSHN 1475


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 545 SITVWRYCTEIFDYLSLSAIIDGRI 619
           +I +W+ C    DYL   A   G I
Sbjct: 196 AIEIWKQCEGKIDYLVAGAGTGGTI 220


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 150 VSDMLKHSVTLQCLFQQQLNVFI 82
           V+  L  SVT+ CLF  +L + +
Sbjct: 884 VTISLSASVTIACLFSPKLYIIL 906


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,902
Number of Sequences: 438
Number of extensions: 4318
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)