Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p04
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical pr...   231   3e-61
AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical ...   107   9e-24
AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical ...    58   4e-09
U40953-4|AAB52649.2|  421|Caenorhabditis elegans Hypothetical pr...    33   0.18 
AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical ...    33   0.24 
U97005-10|AAK72084.1|  646|Caenorhabditis elegans Hypothetical p...    31   0.75 
Z29117-10|CAA82375.2|  182|Caenorhabditis elegans Hypothetical p...    30   1.3  
U55365-1|AAA98567.1|  127|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AL132949-40|CAN99706.1|  329|Caenorhabditis elegans Hypothetical...    28   6.9  
AL132949-39|CAB61094.1|  295|Caenorhabditis elegans Hypothetical...    28   6.9  

>Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical
           protein F10B5.8 protein.
          Length = 608

 Score =  231 bits (565), Expect = 3e-61
 Identities = 101/138 (73%), Positives = 118/138 (85%)
 Frame = +3

Query: 255 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 434
           +P+IKI PLGAGQDVGRSCIL+T+GGKNIM+DCGMHMGY D+RRFPDFSYI   G +T  
Sbjct: 5   IPEIKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDY 64

Query: 435 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 614
           +DCVIISHFHLDHCG+LP+MSE++GY GPIYMT+PTKAI P+LLED RKV  + KGE+NF
Sbjct: 65  LDCVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNF 124

Query: 615 FTSQMIKDCMKKVTAVTL 668
           FTS  IK+CMKKV    L
Sbjct: 125 FTSDDIKNCMKKVVGCAL 142


>AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical
           protein Y67H2A.1 protein.
          Length = 707

 Score =  107 bits (256), Expect = 9e-24
 Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 1/131 (0%)
 Frame = +3

Query: 273 TPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVII 452
           TPLG+GQ+VGRSC LL   GK +MLDCG+H G +     P   ++  E      ID ++I
Sbjct: 14  TPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIEN-----IDLLLI 68

Query: 453 SHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESN-FFTSQM 629
           +HFHLDHCGALP++ +   + G  +MTH TKAI  +LL D  +++     + N  +T   
Sbjct: 69  THFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRMLLGDYVRISKYGGPDRNQLYTEDD 128

Query: 630 IKDCMKKVTAV 662
           ++  M K+  +
Sbjct: 129 LEKSMAKIETI 139


>AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical
           protein F09G2.4 protein.
          Length = 843

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 35/104 (33%), Positives = 47/104 (45%)
 Frame = +3

Query: 264 IKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDC 443
           IK+      +D G  C LL + G  I+LDCG       + RF    Y     P   +I  
Sbjct: 5   IKLKVFSGAKDEGPLCYLLQVDGDYILLDCGW------DERF-GLQYFEELKPFIPKISA 57

Query: 444 VIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDM 575
           V+ISH    H G LPY+    G T P+Y T P   +  + + DM
Sbjct: 58  VLISHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDM 101


>U40953-4|AAB52649.2|  421|Caenorhabditis elegans Hypothetical
           protein F53B1.6 protein.
          Length = 421

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +3

Query: 306 SCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVIISHFHLDHCGAL 485
           S  L+  G K+I++D G+  G N   R      +   G   + +D V+ +H H DH G +
Sbjct: 238 SITLVKDGDKSILVDTGL--GTNINARTELIKSLEMHGLSPADVDIVVSTHGHPDHVGGV 295

Query: 486 PYMSEMIGYTG 518
               + + Y G
Sbjct: 296 HDFPDALHYHG 306


>AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical
           protein Y32B12B.7 protein.
          Length = 324

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 400 EKSGNLLSSL*PICIPQSNIMFLPPMVSKMQLRPTSWPAPSGVILISGIISFTTS 236
           EK G LL+ L P+ I  + ++ LP   +        WP P G I+I   I  ++S
Sbjct: 146 EKIGRLLAYLSPLFIIFAFLLALPRFFTLSTCAQLGWPFPHGAIIIRTFIDHSSS 200


>U97005-10|AAK72084.1|  646|Caenorhabditis elegans Hypothetical
           protein F19F10.12 protein.
          Length = 646

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +3

Query: 435 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDM 575
           ID +++S++  +    LP+ +E  G++G IY+T        +L+E+M
Sbjct: 90  IDAILVSNY--ESFVGLPFYTEGSGFSGKIYVTEIAYQYGKLLMEEM 134


>Z29117-10|CAA82375.2|  182|Caenorhabditis elegans Hypothetical
           protein C48B4.10 protein.
          Length = 182

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 396 NQEIFFHRCSPYAYHNLTLCFCHPWLARC 310
           +++I F++CSP+AY  + LC    +LA C
Sbjct: 110 DKDITFNQCSPFAYAFIFLCIYIFYLAMC 138


>U55365-1|AAA98567.1|  127|Caenorhabditis elegans Hypothetical
           protein C12D5.5 protein.
          Length = 127

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 411 GQCKRNQEIFFHRCSPYAYHNLTLCFC 331
           G CK+ ++I + +  P  ++   LC+C
Sbjct: 76  GSCKKMEKILYDKTQPDIFYEAFLCYC 102


>AL132949-40|CAN99706.1|  329|Caenorhabditis elegans Hypothetical
           protein Y53F4B.39b protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 300 GRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVIISHFHLDHCG 479
           G +  LL  G K I++D G     N          ++      S I+ ++I+H+H DH G
Sbjct: 66  GTNTYLLGTGAKKILVDTGEP---NVTEYISALKSVLAS--TNSHIEYIVITHWHGDHVG 120

Query: 480 ALPYMSEMI 506
            +  +++ I
Sbjct: 121 GIDNITDEI 129


>AL132949-39|CAB61094.1|  295|Caenorhabditis elegans Hypothetical
           protein Y53F4B.39a protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 300 GRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVIISHFHLDHCG 479
           G +  LL  G K I++D G     N          ++      S I+ ++I+H+H DH G
Sbjct: 32  GTNTYLLGTGAKKILVDTGEP---NVTEYISALKSVLAS--TNSHIEYIVITHWHGDHVG 86

Query: 480 ALPYMSEMI 506
            +  +++ I
Sbjct: 87  GIDNITDEI 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,972,272
Number of Sequences: 27780
Number of extensions: 351110
Number of successful extensions: 689
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)