Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29p01
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.49 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.5  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 286  TWYHLVVSQHNARSHGILG*EF 221
            TWYHL V+ HN     +   EF
Sbjct: 1528 TWYHLRVTAHNNAGFAVAEYEF 1549



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 578 PTMVHWSQLN*KGDCKVIAKYSIREQL 658
           P  + W+  N + D K  ++Y+IRE++
Sbjct: 805 PIGILWNMNNKRLDPKSDSRYTIREEI 831


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 172 HSL*YRLPDPQSLFYFSNQTFFKN 101
           H+L Y  P  ++L+Y + ++  K+
Sbjct: 262 HNLYYNSPSSENLYYVNTESLMKS 285


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 463 HLEGFLVGCHLLRRHIQEHKSECKLH 386
           + E   V    L+ HI+ H   CK H
Sbjct: 21  YCEKVYVSLGALKMHIRTHTLPCKCH 46


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +1

Query: 481 IEMIDWRLEDLSPTKNKGILRHILEAGTGLDSPNDGALVTVEL 609
           +  I W  ++ S   +   +  +LE GTG++    G  + +E+
Sbjct: 289 LPQIMWGTKETSTRTDAYTVEIVLEPGTGINVTLKGYCIDMEV 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,547
Number of Sequences: 438
Number of extensions: 4762
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)