Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29o18
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 179 4e-46
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 115 6e-27
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 102 4e-23
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 83 5e-17
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 74 2e-14
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 73 3e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 73 5e-14
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 68 1e-12
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 67 2e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 67 3e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 66 3e-12
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 62 1e-10
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 60 4e-10
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 58 2e-09
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 56 4e-09
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 56 6e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 56 6e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 56 6e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 51 1e-07
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 48 9e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 48 1e-06
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.003
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.003
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 35 0.009
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.20
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 27 1.9
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 1.9
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 2.5
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 7.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 179 bits (435), Expect = 4e-46
Identities = 82/143 (57%), Positives = 103/143 (72%)
Frame = +1
Query: 253 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 432
N+ + DW + +L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 433 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 612
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 613 PPIRRGDGPIALVLAPTRELAQQ 681
P + GDGPI LVLAPTRELA Q
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQ 210
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 115 bits (277), Expect = 6e-27
Identities = 52/139 (37%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Frame = +1
Query: 268 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPD 444
D ++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 445 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 624
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 625 RGDGPIALVLAPTRELAQQ 681
G+GPIA+++ PTRELA Q
Sbjct: 488 TGEGPIAIIMTPTRELAVQ 506
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 102 bits (245), Expect = 4e-23
Identities = 46/109 (42%), Positives = 75/109 (68%), Gaps = 3/109 (2%)
Frame = +1
Query: 364 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 543
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 544 VAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQ 681
+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQ
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQ 340
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 82.6 bits (195), Expect = 5e-17
Identities = 41/91 (45%), Positives = 63/91 (69%)
Frame = +1
Query: 409 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 588
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG+A+TGSGKT+A+ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 589 AIVHINNQPPIRRGDGPIALVLAPTRELAQQ 681
A+ ++N + P LV++PTRELA Q
Sbjct: 223 ALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 73.7 bits (173), Expect = 2e-14
Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +1
Query: 391 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 570
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 571 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQ 681
AY++P + + Q I G AL+L PTRELAQQ
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQ 103
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 73.3 bits (172), Expect = 3e-14
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 600
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 601 I-NNQPPIRRGDGPIALVLAPTRELAQQ 681
+ NN P A+VLAPTRELA Q
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQ 129
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 72.5 bits (170), Expect = 5e-14
Identities = 37/87 (42%), Positives = 52/87 (59%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 600
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 601 INNQPPIRRGDGPIALVLAPTRELAQQ 681
+ + G G AL++APTRELA Q
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQ 87
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/87 (39%), Positives = 54/87 (62%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 600
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 601 INNQPPIRRGDGPIALVLAPTRELAQQ 681
+ +P ++ L+L PTRELA Q
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQ 345
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 67.3 bits (157), Expect = 2e-12
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Frame = +1
Query: 379 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 558
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 559 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQ 681
SGKT ++ P + + + P P+ + G P L+LAPTREL Q
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQ 270
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 66.9 bits (156), Expect = 3e-12
Identities = 38/113 (33%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Frame = +1
Query: 349 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 528
E E+ R V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 529 KNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQ 681
++++G A+TGSGKTLA+++P I ++ P R G G ++++PTRELA Q
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQ 176
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 66.5 bits (155), Expect = 3e-12
Identities = 32/87 (36%), Positives = 52/87 (59%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 600
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 601 INNQPPIRRGDGPIALVLAPTRELAQQ 681
+ + AL+L+P RELA Q
Sbjct: 131 LKS---TLANSNTRALILSPNRELALQ 154
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 61.7 bits (143), Expect = 1e-10
Identities = 38/109 (34%), Positives = 58/109 (53%)
Frame = +1
Query: 355 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 534
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 535 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 681
++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQ 126
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 59.7 bits (138), Expect = 4e-10
Identities = 29/87 (33%), Positives = 53/87 (60%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 600
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 601 INNQPPIRRGDGPIALVLAPTRELAQQ 681
++ + + L+L PTRELA Q
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQ 127
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 57.6 bits (133), Expect = 2e-09
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Frame = +1
Query: 412 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 585
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 586 PAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 681
+ ++ P P A+ LAP+RELA+Q
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQ 199
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 56.4 bits (130), Expect = 4e-09
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Frame = +1
Query: 274 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 447
D++ L N F + P P++ ++ +++ + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGITKG-KAKVTG---NNPVDPIEE--FPEG 55
Query: 448 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 624
+ + +K E T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113
Query: 625 RGDGPIALVLAPTRELAQQ 681
G A+++APTREL +Q
Sbjct: 114 --GGYRAIIVAPTRELCEQ 130
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 55.6 bits (128), Expect = 6e-09
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Frame = +1
Query: 472 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 645
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 646 LVLAPTRELAQQ 681
LV+APTRELA Q
Sbjct: 196 LVVAPTRELAHQ 207
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 55.6 bits (128), Expect = 6e-09
Identities = 33/87 (37%), Positives = 45/87 (51%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 600
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 601 INNQPPIRRGDGPIALVLAPTRELAQQ 681
+ P G AL+L PTRELA Q
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQ 90
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 55.6 bits (128), Expect = 6e-09
Identities = 35/109 (32%), Positives = 60/109 (55%)
Frame = +1
Query: 355 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 534
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 535 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 681
++ AQ+G+GKT + + + I+ +R AL+L+PTRELA Q
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQ 104
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 51.2 bits (117), Expect = 1e-07
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +1
Query: 469 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPP--IRRGDG 636
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 637 PIALVLAPTRELAQQ 681
A+++APTREL QQ
Sbjct: 217 IYAVIMAPTRELCQQ 231
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 48.4 bits (110), Expect = 9e-07
Identities = 27/90 (30%), Positives = 51/90 (56%)
Frame = +1
Query: 412 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 591
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 592 IVHINNQPPIRRGDGPIALVLAPTRELAQQ 681
+ I+ +++ AL+LAPTRELAQQ
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQ 102
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 48.0 bits (109), Expect = 1e-06
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +1
Query: 388 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 564
S ++ P + E A+ + + G+++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 565 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 681
KTLA++L A + P +++L+PTRELA Q
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQ 127
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 532 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 678
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQ 1255
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 532 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 678
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQ 1255
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 35.1 bits (77), Expect = 0.009
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +1
Query: 511 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQ 681
P+ G ++ A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQ 220
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.20
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +1
Query: 520 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 678
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/56 (23%), Positives = 31/56 (55%)
Frame = +2
Query: 209 DLEDLVGKKNSLEVRTCVAQIGILFHSNLSTKTFMIHILQFSKDHHMKSKSTEIIT 376
+L++++ K N + + +A + FH + F+ HI +F K+++ ++ I+T
Sbjct: 358 ELKEILNKYNGVHTQE-LAGMRRRFHLMTAPPYFIFHIKRFMKNNYFTERNQTIVT 412
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 469 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 609
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 27.1 bits (57), Expect = 2.5
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +1
Query: 379 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 558
V V VE PI Y GV +GY + P G P+ ++GK + V
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTV---- 308
Query: 559 SGKTLAYILPAIVHINNQPPIRRGD 633
GK +L + + + P ++RGD
Sbjct: 309 -GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 274 DSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 417
D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 112 DVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 472 PLSLHLVAHNQENL--LLQSIE 413
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,630
Number of Sequences: 5004
Number of extensions: 53944
Number of successful extensions: 181
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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