Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29o12
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    81   7e-17
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    27   1.2  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   2.2  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   3.8  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   5.0  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    25   5.0  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   6.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   6.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   8.8  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 80.6 bits (190), Expect = 7e-17
 Identities = 34/56 (60%), Positives = 44/56 (78%)
 Frame = +3

Query: 108 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQ 275
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S    D KF RNQ+F  +G ++  +Q
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQ 56


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 88   KIENASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQN 222
            K E+ S+   ++I    TK  KLT    K++ R      LAW+Q+
Sbjct: 997  KFEDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARERELAWLQS 1041


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 241 FARRVT*SQPSNSRGRLREKLPEKQRPRNEH*V*ANKRIKNKKK 372
           F RR   + P  SR    ++LP    P N H V  N+  +N+++
Sbjct: 244 FERRFARTVPDASRHPYPDRLPTPLTPSNAHWVVHNEGNRNRRE 287


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 108 MAKSKNHTNHNQNRKAHRNGIKKPRK 185
           +AK  +  NHN ++ A +  I +PRK
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 139 TKTAKLTEMVSKSQGRPGTN 198
           T  A +T++VSK  G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 185 LPWLFDTISVSFAVLVMICMIL*LCHFDAFSIF 87
           +PWL  TI     + +M   ++  C+F  F +F
Sbjct: 257 IPWLSFTIYRGIGISLMRSALINSCNFTLFELF 289


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 126 HTNHNQNRKAHRNGIKKPRKTRHES 200
           HTN  +NR+  + G  K R  R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 243 KTFDSLKILDPCQGWIRAWSSLAF*YHFC 157
           K   SL +LD     + AW+SL   Y+ C
Sbjct: 518 KDLQSLNVLDISLKGVNAWNSLETSYYNC 546


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 372 FFFIFYAFICL-YLMFISWPLLLG*LFSQPPSRVAWLASGY 253
           +   F++  C+ Y  FI  P LLG  F    S   +LA+ Y
Sbjct: 540 YVHFFFSIGCVAYQSFIPLPFLLGPRFKFRSSSRKYLANSY 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,723
Number of Sequences: 5004
Number of extensions: 26151
Number of successful extensions: 71
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)