Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29o08
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    67   3e-12
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.5  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.4  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   4.4  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    26   5.9  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
 Frame = +3

Query: 114 FISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKISDWTMVQDK------------ 257
           F  P +    + WGP E      D+PY PFSKGDRLGKI+DW++ Q K            
Sbjct: 5   FKLPELAPVKSAWGPPETEQIGGDIPYAPFSKGDRLGKIADWSVDQPKDGREQRGRQGAF 64

Query: 258 --KYQNKYASQ-FGAGSSYAYFHDEDESTFHLVDTTRVQK 368
             +++++Y +  +GA S + Y H EDES+F ++D   V +
Sbjct: 65  AGRFRDQYQTYGYGASSIFGYQHSEDESSFSVIDRGSVNR 104


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 456 LNKPRERKLGKRWGQRGAPMKIRDASVTVRPTWVTIE 566
           L+KPR  ++ +++ Q+G   KI+      + TWV  E
Sbjct: 46  LDKPRRTRILEKFAQKGLHEKIQGGCGKYQGTWVPSE 82


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 40  WFKIVT*HSELRCRNTYCRPKGR*GL 117
           W+  V  + ELRC+N YC    R G+
Sbjct: 576 WWTPVYVNQELRCKNAYCDSIQRKGI 601


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 324  LHHGSMHKTNQPRTVMHICSGTSCLAPLSNHLS 226
            L+H  + + N P+ + H C+  SC    S+ LS
Sbjct: 2930 LYHDELFQAN-PQEIHHACNAVSCFLQASSLLS 2961


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 578 EVHIFNRDPCWPYSYRC 528
           +VH +++   WPY+Y C
Sbjct: 375 DVHSYSQSVLWPYAYTC 391


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 148 PVGLSCIIGEINLIGPSAGSTCSDIVVHYVKLQS*TINN*VGTMYS 11
           P  LS     +NL+G   G   SD   H+V  +    +  VGTMY+
Sbjct: 123 PEMLSQWASNLNLLGIPTGLRDSDATTHFVMNRQAGSSITVGTMYA 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,757
Number of Sequences: 5004
Number of extensions: 65550
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)