Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29o08
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.) 160 1e-39
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16) 28 6.2
SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_28458| Best HMM Match : DUF326 (HMM E-Value=3.4) 28 6.2
SB_43966| Best HMM Match : DUF1610 (HMM E-Value=0.0021) 28 8.1
>SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 553
Score = 160 bits (388), Expect = 1e-39
Identities = 92/223 (41%), Positives = 129/223 (57%), Gaps = 28/223 (12%)
Frame = +3
Query: 102 GPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKI-SDWTMVQDKKYQ---- 266
G +F +P IQDNP GWGP +P F+D+PYQPFSK DRLGK+ +T +K +
Sbjct: 3 GKAKFCAPEIQDNPDGWGPCSVPTAFKDIPYQPFSKADRLGKVWLVFTYTDFRKVRFVPG 62
Query: 267 NKYASQFGAGSS-YAYFHDEDESTFHLVDTTRVQKP-YQ------SYQXXXXXXXXXXXX 422
+KY SQFG G+ ++Y+H+EDE++F LVDT+R Q+P Y + +
Sbjct: 63 DKYQSQFGTGNQMFSYYHEEDETSFQLVDTSRTQRPGYMRNRNRFNQRGGYRRDNRGGRF 122
Query: 423 XXXXXXXXMTTLNKPR------ERKLGKRWG-------QRGAPMKIRDASVTVRPTWVTI 563
M L++ R +RK+ + WG ++ M R ASVTVR W +
Sbjct: 123 QGQGGNMGMQNLSRGRDTRNKFQRKMQRNWGGGRHWSDKKTGGMHKRVASVTVREEWKVL 182
Query: 564 ED--MDFPRLAKLSLPGIKEGEDIVSCGTLEYYDKAYDRVNVK 686
ED +DFPRL+KL+LP ++E E + CG++EYYDKAYDRV K
Sbjct: 183 EDGELDFPRLSKLNLPNVEEPETLYECGSVEYYDKAYDRVTTK 225
>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Frame = -1
Query: 534 QMHHESS*VHHVDPTSYQACVHVACS--MLSYHQEYVHPWHHDHAVLEPAHADMTGTAFV 361
Q HH HH T+ + S + S + + HP HH H H+ +T +
Sbjct: 320 QRHHHHPHHHHSAITTIHIIITAPSSPSISSSQRNHHHPHHHSH------HSAITNIHII 373
Query: 360 LE-*CPPGERCFHLHHGSMHKTNQPRTVMHI 271
+ PP HH H + T +HI
Sbjct: 374 ITVPSPPSTSSSQRHHHHPHHHHSAITTIHI 404
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/100 (23%), Positives = 35/100 (35%)
Frame = -1
Query: 570 YLQS*PMLALQLQMHHESS*VHHVDPTSYQACVHVACSMLSYHQEYVHPWHHDHAVLEPA 391
+L S P + + HH H T + + + S Q Y H HH H+ +
Sbjct: 19 HLLSPPSTSSSQRNHHHPHHHHSAITTIHIITTVPSPTSTSSSQRYHHHPHHHHSAITTI 78
Query: 390 HADMTGTAFVLE*CPPGERCFHLHHGSMHKTNQPRTVMHI 271
H +T + PP HH H + +HI
Sbjct: 79 HIIITAPS------PPSTSSSQRHHHHPHHHHSAIITIHI 112
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Frame = -1
Query: 540 QLQMHHESS*VHHVDPTSYQACVHVACS-MLSYHQEYVHPWHHDHAVLEPAHADMTGTAF 364
Q HH HH T+ + S Q Y H HH H+ + H +T +
Sbjct: 190 QRNHHHPHHHSHHSAITNIHIIITAPSPPSTSSSQRYHHHPHHHHSAITTIHIIITAPS- 248
Query: 363 VLE*CPPGERCFHLHHGSMHKTNQPRTVMHI 271
PP HH H + +HI
Sbjct: 249 -----PPSTSSSQRHHHHPHHHHSAIITIHI 274
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Frame = -1
Query: 534 QMHHESS*VHHVDPTSYQACVHVACS--MLSYHQEYVHPWHHDHAVLEPAHADMTGTAFV 361
Q HH HH T+ + S + S + + HP HH H H+ +T +
Sbjct: 158 QRHHHHPHHHHSAITTIHIIITAPSSPSISSSQRNHHHPHHHSH------HSAITNIHII 211
Query: 360 L-E*CPPGERCFHLHHGSMHKTNQPRTVMHI 271
+ PP +H H + T +HI
Sbjct: 212 ITAPSPPSTSSSQRYHHHPHHHHSAITTIHI 242
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Frame = -1
Query: 534 QMHHESS*VHHVDPTSYQACVHVACS--MLSYHQEYVHPWHHDHAVLEPAHADMTGTAFV 361
Q HH HH T+ + S + S + + HP HH H H+ +T +
Sbjct: 386 QRHHHHPHHHHSAITTIHIIITAPSSPSISSSQRHHHHPHHHSH------HSAITNIHII 439
Query: 360 L-E*CPPGERCFHLHHGSMHKTNQPRTVMHI 271
+ PP HH H + +HI
Sbjct: 440 ITAPSPPSTSSSQRHHHHPHHHHSAIITIHI 470
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 347 GHYSSTKAVPVISAWAGSRTAWSWCQGCTYSWWYDNIEQAT*TQAW*EVG 496
GH + + S+ R + WCQGC + D+++Q Q W G
Sbjct: 1346 GHRLFSYVIFFCSSHLSVRGPYVWCQGCGHGGHLDHMKQWFDEQIWCPAG 1395
>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
Length = 736
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = -1
Query: 393 AHADMTGTAFVLE*CPPGERCFHLHHGSMHKTNQPRTVMHICSGTSCLAPLSNHLSCLID 214
A D+T + E PP + H+ H H TN R C C+ S SC+ D
Sbjct: 132 ATKDITSSTVKKETVPPPQ-VHHMIHPRCHGTNSCRGK---C--VDCMQVASERYSCMCD 185
Query: 213 RLC 205
R C
Sbjct: 186 RYC 188
>SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 530 CITNLHRCTTLTPPLTKLAFTWL 462
CI L +C L PPLT L WL
Sbjct: 569 CINFLAQCLLLPPPLTGLHLLWL 591
>SB_28458| Best HMM Match : DUF326 (HMM E-Value=3.4)
Length = 157
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 530 CITNLHRCTTLTPPLTKLAFTWL 462
CI L +C L PPLT L WL
Sbjct: 58 CINFLAQCLLLPPPLTGLHLLWL 80
>SB_43966| Best HMM Match : DUF1610 (HMM E-Value=0.0021)
Length = 175
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 395 GSRTAWSWCQGCTYSWWYDNIEQAT*TQAW*EVGSTWCTY 514
G+RTA WC TYS + +++ + STWCTY
Sbjct: 105 GARTASMWC---TYSQYVVHVQPVCGART----ASTWCTY 137
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,913,977
Number of Sequences: 59808
Number of extensions: 527756
Number of successful extensions: 1178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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