Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29o08
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12017-3|CAA78049.1| 570|Caenorhabditis elegans Hypothetical pr... 97 8e-21
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 33 0.14
Z82051-9|CAB04820.1| 350|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z82051-7|CAB04819.1| 364|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 29 2.4
U41271-3|AAP31439.1| 577|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41271-2|AAA82444.3| 713|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z98866-15|CAB11554.2| 335|Caenorhabditis elegans Hypothetical p... 28 7.2
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p... 27 9.5
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p... 27 9.5
>Z12017-3|CAA78049.1| 570|Caenorhabditis elegans Hypothetical
protein R08D7.3 protein.
Length = 570
Score = 97.5 bits (232), Expect = 8e-21
Identities = 70/221 (31%), Positives = 103/221 (46%), Gaps = 35/221 (15%)
Frame = +3
Query: 129 IQDNPTGWGPYEMPDQFRD-MPYQPFSKGDRLGKISDWTMVQ------DKKYQNK-YASQ 284
+ DN GWGP + +P+Q F+K DR+G+++DW V +++Y + Y S
Sbjct: 11 LADNTVGWGPLASSSSADEPVPFQQFNKADRIGRVADWIGVDRFYRRGNERYNERVYGSA 70
Query: 285 FGAGSSYAYFHDEDESTFHLVDTTR--VQKPYQSYQXXXXXXXXXXXXXXXXXXXXMTTL 458
AGS + Y H DE F LVDT++ + P ++++ +
Sbjct: 71 ANAGSQFDYIHGMDEHNFQLVDTSKPMARNPQRNFRVRQMHLRKMMQKENEKREMVNQST 130
Query: 459 NKPRERKLGK----------------RWGQRGA-------PMKIRDASVTVRPTWVTIED 569
N +R + K R GQRG K R SV VRP WV +E+
Sbjct: 131 NLRMKRSIAKEQQRAFKMWQRRGGNARQGQRGQGGRFGGDRPKERLPSVQVRPEWVVLEE 190
Query: 570 MDFPRLAKLSLPGIKEGEDI--VSCGTLEYYDKAYDRVNVK 686
M+ +KL+LP I G+DI G+L+YYDK DRV+VK
Sbjct: 191 MNLSAFSKLALPNIPGGDDIGDHQYGSLQYYDKTIDRVSVK 231
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = -1
Query: 351 CPPGERCFHLHHGSMHKTN---QPRTVMHIC-SGTSCLAPLSNHLSCLIDRLC*MADRAC 184
CP G C K N QPR V++ C +G ++ + N SC D C + C
Sbjct: 657 CPQGSVCVMSSIQCYQKGNCVPQPRCVLNFCPAGEPYISSIGNAESCTKDEECPTSTHWC 716
Query: 183 P*IGLAS 163
+GLAS
Sbjct: 717 HKLGLAS 723
>Z82051-9|CAB04820.1| 350|Caenorhabditis elegans Hypothetical
protein T23D5.12 protein.
Length = 350
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/72 (20%), Positives = 29/72 (40%)
Frame = -2
Query: 350 VHQVKGAFIFIMEVCIRRTSPEL*CIFXXXXXXLHHCPITYLA*SIAFAEWLIGHVPKLV 171
+H F+F E + S E+ I ++ I +++ + W + PKL+
Sbjct: 68 IHSYNSGFVFFTEPHLSLVSNEIMKIGLVFFCGIYGSTICFISVQFLYRYWALFDAPKLI 127
Query: 170 WHLVRSPAGWII 135
W + W+I
Sbjct: 128 WFEGWMMSAWLI 139
>Z82051-7|CAB04819.1| 364|Caenorhabditis elegans Hypothetical
protein T23D5.10 protein.
Length = 364
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/72 (20%), Positives = 29/72 (40%)
Frame = -2
Query: 350 VHQVKGAFIFIMEVCIRRTSPEL*CIFXXXXXXLHHCPITYLA*SIAFAEWLIGHVPKLV 171
+H F+F E + S E+ I ++ I +++ + W + PKL+
Sbjct: 82 IHSYNSGFVFFTEPHLSLVSNEIMKIGLVFFCGIYGSTICFISVQFLYRYWALFDAPKLI 141
Query: 170 WHLVRSPAGWII 135
W + W+I
Sbjct: 142 WFEGWMMSAWLI 153
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 69 TTMSEHVLPAEGPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQP 200
TT S+ V+ P+ + P + P +PD+ D P +P
Sbjct: 534 TTTSDPVVQTNPPVVIVDPATSEEPLSTASTALPDETTDAPEEP 577
>U41271-3|AAP31439.1| 577|Caenorhabditis elegans Hypothetical
protein C46H3.2b protein.
Length = 577
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 342 GERCFHLHHGSMHKTNQPRTVMHICSGTSCLAP--LSNHLSCL 220
G FH+ +GS T P T M+ S +SCL P + NH + +
Sbjct: 77 GSDSFHVFNGSRTSTPNPPTAMY--SSSSCLYPVKVENHYASI 117
>U41271-2|AAA82444.3| 713|Caenorhabditis elegans Hypothetical
protein C46H3.2a protein.
Length = 713
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 342 GERCFHLHHGSMHKTNQPRTVMHICSGTSCLAP--LSNHLSCL 220
G FH+ +GS T P T M+ S +SCL P + NH + +
Sbjct: 213 GSDSFHVFNGSRTSTPNPPTAMY--SSSSCLYPVKVENHYASI 253
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -1
Query: 336 RCFHLHHGSMHKTNQPRTVMHICSGTSCLAPLSNHL 229
R H HH HKT PRT I T+ AP S+ L
Sbjct: 24 RGHHHHHHHHHKTKAPRTSRGI--ATTTFAPTSSDL 57
>Z98866-15|CAB11554.2| 335|Caenorhabditis elegans Hypothetical
protein Y49E10.18 protein.
Length = 335
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 173 VWHLVRSPAGWIILYYR*NKPHRP--FGRQYVFRHRSSL 63
VWH P + I+++R PH P +G+ +F HR+ +
Sbjct: 243 VWHDKTFPYSFRIVHHRDIVPHIPPQYGKDELFHHRTEV 281
>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical protein
T24F1.6a protein.
Length = 1067
Score = 27.5 bits (58), Expect = 9.5
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 402 LEPAHADMTGTAFVLE*CPPGERCF--HLHHG-SMHKTNQPR-TVMHICSGTSCLAPLSN 235
L A MTG + P ERCF H+ +++ T Q + T M CS + L P+ +
Sbjct: 923 LVDAQPSMTGNTCTFQKIKPFERCFMKFFHYRMTLNITKQLQLTGMSTCSRYAKLYPVPH 982
Query: 234 HLSCLIDRLC*MADRAC 184
LI +ADRAC
Sbjct: 983 TTLSLI-----IADRAC 994
>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical protein
T24F1.6b protein.
Length = 1067
Score = 27.5 bits (58), Expect = 9.5
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 402 LEPAHADMTGTAFVLE*CPPGERCF--HLHHG-SMHKTNQPR-TVMHICSGTSCLAPLSN 235
L A MTG + P ERCF H+ +++ T Q + T M CS + L P+ +
Sbjct: 923 LVDAQPSMTGNTCTFQKIKPFERCFMKFFHYRMTLNITKQLQLTGMSTCSRYAKLYPVPH 982
Query: 234 HLSCLIDRLC*MADRAC 184
LI +ADRAC
Sbjct: 983 TTLSLI-----IADRAC 994
>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 27.5 bits (58), Expect = 9.5
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 402 LEPAHADMTGTAFVLE*CPPGERCF--HLHHG-SMHKTNQPR-TVMHICSGTSCLAPLSN 235
L A MTG + P ERCF H+ +++ T Q + T M CS + L P+ +
Sbjct: 923 LVDAQPSMTGNTCTFQKIKPFERCFMKFFHYRMTLNITKQLQLTGMSTCSRYAKLYPVPH 982
Query: 234 HLSCLIDRLC*MADRAC 184
LI +ADRAC
Sbjct: 983 TTLSLI-----IADRAC 994
>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 27.5 bits (58), Expect = 9.5
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 402 LEPAHADMTGTAFVLE*CPPGERCF--HLHHG-SMHKTNQPR-TVMHICSGTSCLAPLSN 235
L A MTG + P ERCF H+ +++ T Q + T M CS + L P+ +
Sbjct: 923 LVDAQPSMTGNTCTFQKIKPFERCFMKFFHYRMTLNITKQLQLTGMSTCSRYAKLYPVPH 982
Query: 234 HLSCLIDRLC*MADRAC 184
LI +ADRAC
Sbjct: 983 TTLSLI-----IADRAC 994
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,604,018
Number of Sequences: 27780
Number of extensions: 376668
Number of successful extensions: 880
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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