Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29o08
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.17 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   8.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 525 DASVTVRPTWVTIEDMDFPRLAKLSLPGIKEGEDI 629
           D ++ V   W+   D + P+LA  +   IK+ E+I
Sbjct: 583 DPNLAVYGVWINCLDPNLPKLALFATKDIKQNEEI 617


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 465  PRERKLGKRWGQRGAP 512
            P E + G ++GQ GAP
Sbjct: 1815 PEEDQYGSQYGQYGAP 1830


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 462 KPRERKLGKRWGQRGAPMKIRDASVTVRPTWVTIEDMDFP 581
           K ++R L    G     ++I     T+RP + T++  ++P
Sbjct: 93  KKKKRSLMGAQGLSIRGLQINHEDETIRPVFSTLQRAEYP 132


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 151 GDLTRCQTNLGT 186
           G LT C TNLGT
Sbjct: 265 GFLTFCPTNLGT 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,625
Number of Sequences: 438
Number of extensions: 4278
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)