Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29o08
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20980.1 68417.m03037 eukaryotic translation initiation facto... 50 1e-06
At5g44320.1 68418.m05427 eukaryotic translation initiation facto... 49 3e-06
At3g03750.2 68416.m00381 SET domain-containing protein low simil... 29 2.9
At3g03750.1 68416.m00380 SET domain-containing protein low simil... 29 2.9
At3g01480.1 68416.m00072 peptidyl-prolyl cis-trans isomerase, pu... 29 3.8
At5g10060.1 68418.m01165 expressed protein 28 5.0
At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containi... 28 5.0
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 28 6.7
At1g68380.1 68414.m07811 expressed protein contains Pfam profile... 28 6.7
At5g35980.1 68418.m04333 protein kinase family protein contains ... 27 8.8
At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR ... 27 8.8
>At4g20980.1 68417.m03037 eukaryotic translation initiation factor 3
subunit 7, putative / eIF-3 zeta, putative / eIF3d,
putative similar to initiation factor 3d [Arabidopsis
thaliana] GI:12407755, SP|O15371 Eukaryotic translation
initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
(eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)
Length = 591
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/53 (39%), Positives = 35/53 (66%)
Frame = +3
Query: 528 ASVTVRPTWVTIEDMDFPRLAKLSLPGIKEGEDIVSCGTLEYYDKAYDRVNVK 686
+SV ++P W +E + F +KLS ++E ED++ CG LEYY++ +DR+ K
Sbjct: 183 SSVDIQPEWNMLEQIPFSTFSKLSYT-VQEPEDLLLCGGLEYYNRLFDRITPK 234
Score = 31.5 bits (68), Expect = 0.54
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +3
Query: 183 DMPYQPFSKGDRLGKISDWT 242
++P+ FS+ D+LG+++DWT
Sbjct: 43 NVPFASFSRSDKLGRVADWT 62
>At5g44320.1 68418.m05427 eukaryotic translation initiation factor 3
subunit 7, putative / eIF-3 zeta, putative / eIF3d,
putative similar to initiation factor 3d [Arabidopsis
thaliana] GI:12407755, SP|O15371 Eukaryotic translation
initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
(eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)
Length = 588
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = +3
Query: 528 ASVTVRPTWVTIEDMDFPRLAKLSLPGIKEGEDIVSCGTLEYYDKAYDRVNVK 686
+SV ++P W +E + F +KLS + E ED++ CG LE YD+++DR+ K
Sbjct: 179 SSVDIQPEWNMLEQIPFSTFSKLSFT-VSEPEDLLLCGGLESYDRSFDRITPK 230
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 10/45 (22%)
Frame = +3
Query: 138 NPTGWGPYEMPDQ----------FRDMPYQPFSKGDRLGKISDWT 242
N GWGP + D ++P+ FS+ ++LG+++DWT
Sbjct: 14 NSDGWGPPDASDTSSTSVAAANLLPNVPFASFSRSEKLGRVADWT 58
>At3g03750.2 68416.m00381 SET domain-containing protein low
similarity to G9a [Homo sapiens] GI:287865; contains
Pfam profiles PF00856: SET domain, PF05033: Pre-SET
motif
Length = 354
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -1
Query: 363 VLE*CPPGERCFHLHHGSMHKTNQPRTVMHICSGTSCLAPLSNHLSCLIDRLC 205
V E P G+ C ++ + N R + H C G + L L+ RLC
Sbjct: 253 VREHLPSGQACLRINIDATRIGNVARFINHSCDGGNLSTVLLRSSGALLPRLC 305
>At3g03750.1 68416.m00380 SET domain-containing protein low
similarity to G9a [Homo sapiens] GI:287865; contains
Pfam profiles PF00856: SET domain, PF05033: Pre-SET
motif
Length = 338
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -1
Query: 363 VLE*CPPGERCFHLHHGSMHKTNQPRTVMHICSGTSCLAPLSNHLSCLIDRLC 205
V E P G+ C ++ + N R + H C G + L L+ RLC
Sbjct: 237 VREHLPSGQACLRINIDATRIGNVARFINHSCDGGNLSTVLLRSSGALLPRLC 289
>At3g01480.1 68416.m00072 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase,
chloroplast precursor (40 kDa thylakoid lumen PPIase, 40
kDa thylakoid lumen rotamase) [Spinacia oleracea]
SWISS-PROT:O49939
Length = 437
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 MRFISPIIQDNPTGWGPYEMPDQFRDMP-YQPFSKGDRLGKISDWTMVQD 254
++++ I +D G+ PYE+P+++R+MP + + D KI D ++D
Sbjct: 207 LKYVGGIEEDMVDGF-PYEVPEEYRNMPLLKGRASVDMKVKIKDNPNIED 255
>At5g10060.1 68418.m01165 expressed protein
Length = 469
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +3
Query: 69 TTMSE-HVLPAEGPMRFISPIIQDNPTGWGPYE-MPDQFRDMPYQPFSKGDRLGKISDWT 242
TT + HV+P P +F+ P + +NP +G MP P P G++ +I
Sbjct: 385 TTQGQYHVIPNPPPPQFLKPPVMNNPYAFGNIPLMPPGLPPPPPPPHLIGNQQPQIPQSN 444
Query: 243 MVQDKK 260
Q +
Sbjct: 445 SAQQSQ 450
>At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 570
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 288 RTVMHICSGTSCLAPLSNHLSCLIDRLC 205
R + H + + P S H SCLID LC
Sbjct: 400 RKIFHSMTERHNVQPKSEHCSCLIDLLC 427
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 90 LPAEGPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKISD 236
+P P R++S + PDQ D+ +P+S LG ISD
Sbjct: 76 VPVPVPGRYVSKRERSLLASLSTIPTPDQSSDLSQKPYSSPTVLGSISD 124
>At1g68380.1 68414.m07811 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 392
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 574 SISSIVTHVGLTVTDASRIFIGAPR*PHLLPSLRSRGLFNVVIP 443
S+ + + LT+ S++F P P L PS + GL +IP
Sbjct: 48 SLQGLSSPSSLTIQSVSQLFFVTPPPPILSPSFQDNGLDMFLIP 91
>At5g35980.1 68418.m04333 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 956
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 198 PFSKGDRLGKISDWTMVQDKKYQ-NKYASQFGAGSSYAYF 314
P+S + G I + D Q N Y S G G+ +AY+
Sbjct: 526 PYSHANSYGSIGSYGSYNDGTIQDNSYGSYGGTGNMFAYY 565
>At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR
class), putative similar to diesease resistance protein
rpp8 [Arabidopsis thaliana] gi|3901294|gb|AAC78631
Length = 1138
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 576 FPRLAKLSLPGIKEGED 626
FP+L KLS+ G+KE ED
Sbjct: 823 FPQLQKLSISGLKEWED 839
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,707,890
Number of Sequences: 28952
Number of extensions: 351730
Number of successful extensions: 874
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -