Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29o06
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    30   1.6  
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044...    30   2.1  
09_06_0002 + 20121846-20123308,20123420-20123426                       28   8.5  
05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671     28   8.5  

>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
            6272359-6272511,6273381-6273586,6274280-6274733,
            6276573-6276610,6276923-6277046,6277184-6277246,
            6277350-6277412,6277526-6278152,6278267-6278294,
            6278373-6278413,6278689-6278851,6278987-6279039,
            6279217-6279262,6279373-6279444,6279578-6279741,
            6279968-6280099,6280249-6280565,6280721-6280892,
            6281009-6281107,6281275-6281349,6281446-6281504,
            6281647-6281836,6281982-6282020
          Length = 1255

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 406  IVLMASNNCSANLSNMSVKSGNESVISESNVFN 308
            +V + SN CS    NMS+KS  E + ++SN F+
Sbjct: 944  VVCLGSNTCSNKTKNMSIKS--EHIYNKSNQFD 974


>01_06_1593 +
           38502884-38502993,38503580-38503665,38504352-38504497,
           38504817-38504933,38505028-38505144,38505858-38506001,
           38506099-38506251
          Length = 290

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 249 NQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQTQRNE 428
           N+ + +L   E   D+I TRLN  ++ + D L  +   +D   +Q L  +  +  T R E
Sbjct: 206 NEPLHVLVEAEFPADIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREE 265


>09_06_0002 + 20121846-20123308,20123420-20123426
          Length = 489

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 568 LTKPTDKNWTSCTLWLTISKIYSRE 642
           L  P+  + T+C+LW+T S I+ +E
Sbjct: 238 LAHPSPSSSTNCSLWMTKSAIFPKE 262


>05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671
          Length = 340

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 83  IAVTFIVSQARTATNIRRAGKNSSSKRHVDEQRQPNKSQ 199
           + VT  VS       +RRAGK++       +Q+QPN  Q
Sbjct: 50  VTVTGKVSADTLVRKLRRAGKHAEQWPEEQQQQQPNGGQ 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,600,404
Number of Sequences: 37544
Number of extensions: 250116
Number of successful extensions: 732
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)