Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29o06
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81059-5|CAJ15164.1|  176|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81059-3|CAB02927.1|  246|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical p...    29   3.3  

>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -3

Query: 150 EFFPARRIFVAVLAWETMNVTAI*TGTEIAN 58
           E+  AR IFVAV+A   MN+TA+ T  ++ +
Sbjct: 184 EYSTARAIFVAVVAGAVMNITAVLTFRKVVS 214


>Z81059-5|CAJ15164.1|  176|Caenorhabditis elegans Hypothetical
           protein F11F1.8 protein.
          Length = 176

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
 Frame = +3

Query: 234 MTGVRNQNVQ-LLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDK---LAEQLLEAIN 401
           + G  N  ++ L++ +    + +L  +  +L  + D L DL+ ++D     + + ++AIN
Sbjct: 81  LLGSANDELKNLISTVFKLIEQLLNEVADILQSLPDVLGDLSKIVDDKNLTSVEKIDAIN 140

Query: 402 TMQQTQRNELNNTNSILTNL 461
            ++ T + ELN    I+T L
Sbjct: 141 QLRGTNKIELNTIIFIITQL 160


>Z81059-3|CAB02927.1|  246|Caenorhabditis elegans Hypothetical
           protein F11F1.5 protein.
          Length = 246

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
 Frame = +3

Query: 219 ELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLE-- 392
           +L+ ++ G+ ++   L++ + T    +L  +  +L  + D L  L+ ++D      +E  
Sbjct: 147 KLNGLVPGLGDELNNLISTIFTLIKQLLNEVADILQSLPDILGKLSKIVDDKNLTSIEKN 206

Query: 393 -AINTMQQTQRNELNNTNSILTNL 461
            AIN ++ T + ELN    I+T L
Sbjct: 207 NAINQLKGTNKIELNTIIFIITQL 230


>U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical
           protein K12D9.12 protein.
          Length = 831

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -2

Query: 469 LDAKLVKIELVLFNSLRCVCCIVLMASNNCSANLSNMSVKSGNESVISESNVFNLVKITS 290
           LDAKL +    L + + C+   +    NNC   + N+ ++ G+E  +++  V   +   S
Sbjct: 663 LDAKLCEDYGNLEDIVLCIFISMEELPNNCEIIMGNLIIEGGDEDYVTKLRVLEFL-FGS 721

Query: 289 LAVSN 275
           L + N
Sbjct: 722 LIIQN 726


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,695,040
Number of Sequences: 27780
Number of extensions: 223177
Number of successful extensions: 614
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)