Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29o05
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity...    29   1.8  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   5.4  
U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1 (de...    27   5.4  
U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1 (de...    27   5.4  
AF022984-3|AAB69951.1|  343|Caenorhabditis elegans Hypothetical ...    26   9.4  

>Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical
           protein C48D1.3 protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 50  LICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 148
           L+C+VY+ RS     + G+   L++ ++GG  L
Sbjct: 423 LLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455


>AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity
           choline transporterCHO-1 protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 50  LICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 148
           L+C+VY+ RS     + G+   L++ ++GG  L
Sbjct: 423 LLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -2

Query: 285 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 145
           NF IM P +++  + W+ +     ++   L+ +RG T  + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -2

Query: 285 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 145
           NF IM P +++  + W+ +     ++   L+ +RG T  + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511


>U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform a protein.
          Length = 839

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +1

Query: 160 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 282
           +FDPN+ T   + ++G     +    C F P+ L     RK YI+
Sbjct: 578 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 622


>U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform b protein.
          Length = 842

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +1

Query: 160 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 282
           +FDPN+ T   + ++G     +    C F P+ L     RK YI+
Sbjct: 581 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 625


>AF022984-3|AAB69951.1|  343|Caenorhabditis elegans Hypothetical
           protein ZK488.4 protein.
          Length = 343

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +1

Query: 127 HRRRSRSLHGRVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGRKHYIKVDCRRHDS 306
           + R + S+  + F+ N   S  + +I +  G   S     + EF+  K +       HDS
Sbjct: 216 YSRHNESIVNKFFENNGPLSMFINQIKSTLGSSLSQLTFNIYEFSALKAFCVWKLSYHDS 275

Query: 307 TNSISLSKTD---NCCSSIHSGFK 369
           T SI++   +     CS++   ++
Sbjct: 276 TISINIMAEEQYIGICSALRKHYE 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,666,628
Number of Sequences: 27780
Number of extensions: 198527
Number of successful extensions: 423
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)