Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29n17
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   141   3e-35
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   140   6e-35
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    25   2.6  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   3.5  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.1  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    24   8.0  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   8.0  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    24   8.0  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    24   8.0  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   8.0  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  141 bits (342), Expect = 3e-35
 Identities = 60/84 (71%), Positives = 69/84 (82%)
 Frame = +3

Query: 27  MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTNG 206
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KAKRR+T G
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 207 TGRMRHLKIVRRRFRNGFKEGKPT 278
           TGRM +LK V R F+NGF+ GKPT
Sbjct: 61  TGRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  140 bits (339), Expect = 6e-35
 Identities = 61/91 (67%), Positives = 70/91 (76%)
 Frame = +3

Query: 27  MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTNG 206
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KAKRR+T G
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 207 TGRMRHLKIVRRRFRNGFKEGKPTPPKKAVA 299
           TGRM +LK V R F+NGF+ GKP     A A
Sbjct: 61  TGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 235 TIFK*RMRPVPLVFLRLAFTDQW*DRNFAAGYPHWAHF 122
           T+F   +  +P++ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +3

Query: 63  NKTHTLCRRCGRSSYHIQKSKCAQCGYP 146
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 335 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 240
           IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 17  IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 133 WAHFDF*M*YDDLPHLLHNVWVLFRRLPKLEVPFVI 26
           W+H D     D   H LHN W    R  K +  F++
Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAKDQWGFLL 193


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 54   KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYP 146
            KR N    L  R       +Q ++C  CG P
Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 IQKSKCA-QCGYPAAKLRSYHWSVKAKRRKTNGTGRM 218
           + K K A Q G+P ++L S+ W +  KR++    GR+
Sbjct: 64  VAKMKTAKQNGFPNSQLGSFDWGM-IKRKRDAYIGRL 99


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 33  KGTSSFGKRRNKTHTLCRRCGRSS 104
           KGTS     R+ T+ L R C +SS
Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -1

Query: 126 ILIFECDMTIYHIFCITYGSYFGAYRSLR 40
           +LI+ CD  +++  CI + S +  + S++
Sbjct: 211 VLIWLCDSFVFYSCCIVFISSYSIFLSVK 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,304
Number of Sequences: 5004
Number of extensions: 25595
Number of successful extensions: 62
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)