Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29n17
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161... 142 1e-34
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63... 142 1e-34
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378... 140 3e-34
02_04_0293 + 21644415-21644533,21644686-21645118 29 1.4
02_01_0220 + 1444219-1444414,1444535-1444635,1445449-1446174 28 2.5
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 27 4.3
12_01_0972 - 9796129-9797013 27 5.7
09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292 27 5.7
12_02_0377 + 18342631-18342675,18343654-18343771,18344233-183443... 26 7.6
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788 26 7.6
>08_01_0195 +
1612938-1613003,1613026-1613161,1614624-1614725,
1614833-1614876
Length = 115
Score = 142 bits (343), Expect = 1e-34
Identities = 60/97 (61%), Positives = 76/97 (78%)
Frame = +3
Query: 9 IVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAK 188
++ S + KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 16 LLHSSNVGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAI 75
Query: 189 RRKTNGTGRMRHLKIVRRRFRNGFKEGKPTPPKKAVA 299
RRKT GTGRMR+++ V RRF++ F+EG P+K A
Sbjct: 76 RRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRKRAA 112
>02_01_0089 +
633642-633644,633728-633863,635356-635457,635565-635608
Length = 94
Score = 142 bits (343), Expect = 1e-34
Identities = 60/93 (64%), Positives = 75/93 (80%)
Frame = +3
Query: 27 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTNG 206
M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA RRKT G
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 207 TGRMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 305
TGRMR+++ V RRF++ F+EG P+K A++
Sbjct: 61 TGRMRYMRHVPRRFKSNFREGTEATPRKRAAAA 93
>02_05_1204 +
34936696-34936698,34936809-34936944,34937794-34937895,
34938153-34938199
Length = 95
Score = 140 bits (339), Expect = 3e-34
Identities = 60/93 (64%), Positives = 75/93 (80%)
Frame = +3
Query: 27 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTNG 206
M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA RRKT G
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 207 TGRMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 305
TGRMR+L+ V +RF++ F+EG P+K A++
Sbjct: 61 TGRMRYLRHVPKRFKSNFREGTEAAPRKKGAAA 93
>02_04_0293 + 21644415-21644533,21644686-21645118
Length = 183
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 87 RCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTNGTG 212
RCG + +Q C++ A R +W ++ RR+ G G
Sbjct: 29 RCGHCHHRLQHRYCSELYPRVAAYRRCNWCLREGRRRGGGGG 70
>02_01_0220 + 1444219-1444414,1444535-1444635,1445449-1446174
Length = 340
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 177 VKAKRRKTNGTGRMRHLKIVRRRFRNGFKEGKPT 278
V+++RR+ G+G +R RRR R G + +PT
Sbjct: 302 VESERRRFKGSGHLRLAFRRRRRTRPGSRPARPT 335
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 51 GKRRNKTHTLCRRCGRSSYHIQKSK----CAQCGYPAAK 155
G+ + K T CR CG + K CA+CG+P K
Sbjct: 9 GEHKGKEKT-CRVCGEEVAAREDGKPFVACAECGFPVCK 46
>12_01_0972 - 9796129-9797013
Length = 294
Score = 26.6 bits (56), Expect = 5.7
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +3
Query: 6 RIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKA 185
R K K KG + R+ + C RCG S H+ K C P + Y S+K
Sbjct: 236 RKFKGRKKGKGKDKAPQPRSNVNKHCNRCG-SDTHVAK----DCRIPKYLVLLYQKSLKD 290
Query: 186 KR 191
K+
Sbjct: 291 KK 292
>09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292
Length = 222
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 39 TSSFGKRRNKTHTLCRRCGRSSYHIQKS 122
T +FG K HT CR CG +S++ +S
Sbjct: 26 TYTFGTHTAK-HTFCRVCGITSFYTPRS 52
>12_02_0377 +
18342631-18342675,18343654-18343771,18344233-18344380,
18345142-18345220,18345330-18345449,18346112-18346285,
18346424-18346525
Length = 261
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 186 KRRKTNGTGRMRHLKIVRRRFRNGFKEGKPTPPKKAV 296
K K GTGR RH + +FR G P P A+
Sbjct: 111 KPYKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAI 147
>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
Length = 326
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 140 ISCSKITILPLVSEG*AQED*WNW--PHASFEDC 235
I+ +T + +S + +D W W PH +EDC
Sbjct: 116 IALPPVTTIEQLSIARSGDDKWTWLPPHKDYEDC 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,288,720
Number of Sequences: 37544
Number of extensions: 178639
Number of successful extensions: 433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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