Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29n05
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    30   0.33 
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    28   1.3  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    27   3.1  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   7.1  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   9.4  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    25   9.4  

>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 440 RSLSPSARAWQNTYSALYNVHSSAKRLLTNFSLPIIVRIVLSHLT 574
           RSLS     W +  S +YN  SS + ++     P  VR+ L  LT
Sbjct: 343 RSLSNDGNHWGSLSSTIYNPSSSPRTIVYFEKFPWFVRVYLHTLT 387


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 647  HRRRRRQRTEILVVNRLLIGNTLEWSDVT 561
            H RR  +R    VVN   +GNT  ++ VT
Sbjct: 1264 HTRRNGERNRFSVVNGCFLGNTYAFASVT 1292


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 4   GIVVPSSSGLTNPSNITCFSLNLLTIVTLSL 96
           GI  PS SG T+ + +   +LNL  +V LSL
Sbjct: 25  GIAGPSGSGKTSVAQLIVKALNLPHVVILSL 55


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 544 NCANCVVTSDHSKVFPMS 597
           NC NC+V  D   V P+S
Sbjct: 194 NCENCLVIDDELNVLPIS 211


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 205 LRSV*MLDVVLHLPNS 158
           LRS  +LD+VLH PNS
Sbjct: 221 LRSDNILDIVLHYPNS 236


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -2

Query: 390 VYENSRRFEFINPDEIASGKRLIIKHLQDESQSDI 286
           ++E  RR++ +NP+ + S    ++  +QD  + +I
Sbjct: 124 IFEIGRRYKVLNPNRLGSTYGKLMYFVQDSMRPEI 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,632
Number of Sequences: 5004
Number of extensions: 54073
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)