Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29n05
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    33   0.17 
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    33   0.17 
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      33   0.17 
Z48809-5|CAE17927.1|  205|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical ...    29   3.8  
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL117200-7|CAB55059.1|  221|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 466  LAKHVLGVVQCAQLGQTSPYKLFVANNCANCVVTSDHSKVFPMSSRFTTNISV 624
            L++ +LGVV  A +G    Y++F    C N     + S +  +SS     + +
Sbjct: 1540 LSRDILGVVSAAVMGGVKNYEVFFTEACRNICECGEQSVIMELSSLIIEQVEI 1592


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 466  LAKHVLGVVQCAQLGQTSPYKLFVANNCANCVVTSDHSKVFPMSSRFTTNISV 624
            L++ +LGVV  A +G    Y++F    C N     + S +  +SS     + +
Sbjct: 1540 LSRDILGVVSAAVMGGVKNYEVFFTEACRNICECGEQSVIMELSSLIIEQVEI 1592


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 466  LAKHVLGVVQCAQLGQTSPYKLFVANNCANCVVTSDHSKVFPMSSRFTTNISV 624
            L++ +LGVV  A +G    Y++F    C N     + S +  +SS     + +
Sbjct: 1540 LSRDILGVVSAAVMGGVKNYEVFFTEACRNICECGEQSVIMELSSLIIEQVEI 1592


>Z48809-5|CAE17927.1|  205|Caenorhabditis elegans Hypothetical
           protein T01E8.8 protein.
          Length = 205

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 645 QKKTTTTHRNISSKPAAHWKYFGVVRCD 562
           +++ +T  R +S+KP  H   +GVV CD
Sbjct: 150 KRQASTPKREMSTKPIGHLTLYGVVDCD 177


>AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical
           protein C24B9.3a protein.
          Length = 429

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 236 ITIMPCSLMDTEICLNVRCRSPFAKFKVLIIVDGFDSAYIQATF 105
           ++++  S   + ICL   C S   +  ++I+VD   +AY Q TF
Sbjct: 9   VSLLVASTSASHICLQTACSSFNVESDIVIVVDA-SNAYDQVTF 51


>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
           protein T13H2.5b protein.
          Length = 1092

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +1

Query: 133 NPSTIINTLNLANGERHLTFKQISVSIKLHGIMVMRSTQLGSSSPFKLIG 282
           +PST++   NL+  ERH   +Q+  S +L  ++   ++   S +  +++G
Sbjct: 167 HPSTMLAMGNLSINERHNKVQQVLASQELQDLIARHTSGAVSQTQVEVVG 216


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +1

Query: 133  NPSTIINTLNLANGERHLTFKQISVSIKLHGIMVMRSTQLGSSSPFKLIG 282
            +PST++   NL+  ERH   +Q+  S +L  ++   ++   S +  +++G
Sbjct: 1546 HPSTMLAMGNLSINERHNKVQQVLASQELQDLIARHTSGAVSQTQVEVVG 1595


>AL117200-7|CAB55059.1|  221|Caenorhabditis elegans Hypothetical
           protein Y50E8A.11 protein.
          Length = 221

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 34  TNPSNITCFSLNLLTIVTLSLML 102
           +NPSNI  +S+ +L IVTL +++
Sbjct: 148 SNPSNIVLYSVLILVIVTLLILV 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,108
Number of Sequences: 27780
Number of extensions: 301367
Number of successful extensions: 781
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)