Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29n01
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...   100   2e-22
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    30   0.27 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.1  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    28   1.4  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    27   3.3  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    26   5.8  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    26   5.8  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   7.7  

>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score =  100 bits (240), Expect = 2e-22
 Identities = 53/175 (30%), Positives = 92/175 (52%)
 Frame = +1

Query: 157 LS*SIF*QQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKE 336
           +S S+   +R  HEE ER   A+V   +      RE +  +H+     +++ E S +L  
Sbjct: 1   MSESVLETERYAHEELERLQQAIVDRQVANPKAPRERLRLEHQSAQFLNQFRETSKKLLV 60

Query: 337 LYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQREN 516
            +E  D L+ +E++ ++   +  EFY  L +I+EFH+K+P+     +S  +    +Q   
Sbjct: 61  SHESSDRLKDQEVARINADDDLTEFYKSLGEIQEFHKKYPDHKVEDLSQLYSIKPSQ--- 117

Query: 517 PAEDYTVPVEFTDEEGYGKYLDLHSCYEKYINLKGIEKVDYITYLSIFDHLFDIP 681
           P  D  +   F  EE YG+++DL+ CYE+YINL  ++ + Y+ YL   +    IP
Sbjct: 118 PGID-EIDTLFRGEEMYGRFMDLNECYEEYINLSNVQHISYLEYLKNLEDFDQIP 171


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
 Frame = +1

Query: 178  QQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEAS------------ 321
            QQR+Y EE  R  +A  + +      + E +   + + ++HD Y+E++            
Sbjct: 788  QQRAYEEEINRIWNAQKRGL---SINNLEELAKKYGINSIHDDYVESNEETTREETPSSD 844

Query: 322  --IRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 438
              +R+  LY DK+G  + +   +  P     +  + ++I E
Sbjct: 845  KVLRIVRLYRDKNGNLERKQETIHDPIVIHAYLKKRREIDE 885


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +1

Query: 268 INADHRLKNLHDRYIEASIRLKELYEDKDGLRKEE--ISALSGPHEFQEFYSRLKQIKEF 441
           ++  HR     D      IRLK+       L++E+      +   + + F ++LK I+ F
Sbjct: 416 VDFSHRTAVSSDILSLCYIRLKDFLRISGSLKEEQSYYGLKNSIKQIKAFENKLKYIQSF 475

Query: 442 HRKH 453
           H KH
Sbjct: 476 HEKH 479


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/78 (23%), Positives = 39/78 (50%)
 Frame = +1

Query: 172 F*QQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDK 351
           F   ++ HEE    +D+ + E++ K+   +E      +++ + D   +    L+EL E+K
Sbjct: 174 FLSSQTVHEENTAALDSEIDELM-KQINEKE-----EKIEEISDETDKLQKLLRELDEEK 227

Query: 352 DGLRKEEISALSGPHEFQ 405
           + +  EE    +  ++FQ
Sbjct: 228 EKVYAEEQEFYNNLNQFQ 245


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 235 ILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPH--EFQE 408
           I++ +   RE +N   R +    + +EA    +E  E+K        S++SG H  EF E
Sbjct: 184 IINMRACLREPLNRIARQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLE 243

Query: 409 FYSRLKQ 429
           +   LK+
Sbjct: 244 YVESLKK 250


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +1

Query: 364 KEEISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRENPAED 528
           +E  SA+   +  QEFY R+  +++  R  P+  +    + ++   N R+ P+ +
Sbjct: 153 EEATSAIDNLNS-QEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNN 206


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 331 KELYEDKDGLRKEEISALSGPHEFQEFYSR 420
           KE  +++D L+KEE   +  P EF+ F  R
Sbjct: 314 KEGLDEQDNLQKEESVHIDVPAEFEAFDER 343


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 220 AMVKEILHKKTGHRETINADHRLKN 294
           ++ K  LHK T H  T  + H  KN
Sbjct: 22  SLYKRRLHKSTSHSSTATSSHYSKN 46


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 568  GKYLDLHSCYEKYINLKGIEK 630
            G Y+DL SC  K+  L G +K
Sbjct: 1344 GAYIDLISCITKFAKLNGNQK 1364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,068
Number of Sequences: 5004
Number of extensions: 53484
Number of successful extensions: 204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)